Jatropha Genome Database

JcCA0116381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116381.10 - phase: 1 /partial
         (196 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g13290.1                                                       308   3e-84
Glyma05g30130.1                                                       307   4e-84
Glyma04g14230.1                                                        74   9e-14

>Glyma08g13290.1 
          Length = 474

 Score =  308 bits (788), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 165/190 (86%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKM AVQRN  KFGI+EIARTGKIALRREKMG  APFWR+SAASYPDL    P +
Sbjct: 191 VTGDPGKMAAVQRNFSKFGIKEIARTGKIALRREKMGASAPFWRYSAASYPDLEGRTPVN 250

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
           A +G+K      + DT VGGDVYP+EP D F V QVLDAHWGVLNE+DT+G+RSHTLSML
Sbjct: 251 AMVGAKNMKPVAKHDTPVGGDVYPIEPPDGFTVNQVLDAHWGVLNEEDTSGIRSHTLSML 310

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           VNDAPGVLNIVTGVFARRGYNIQSLAVGH+E EG+SR+TTVVPGTDESISKLVQQLYKLV
Sbjct: 311 VNDAPGVLNIVTGVFARRGYNIQSLAVGHAEVEGLSRLTTVVPGTDESISKLVQQLYKLV 370

Query: 181 ELHEVRNFSN 190
           ELHEVR+ ++
Sbjct: 371 ELHEVRDITH 380



 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 110 TGLRSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESI 169
           + +R HT+S+ V D  G++N + GVFARRGYNI+SLAVG +E   +   T VV GTD+ +
Sbjct: 67  SKVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNEDRAL--FTIVVSGTDKVL 124

Query: 170 SKLVQQLYKLVELHEVRNFSNQ 191
            ++++QL KLV + +V + S +
Sbjct: 125 RQVMEQLQKLVNVLKVEDLSRE 146


>Glyma05g30130.1 
          Length = 391

 Score =  307 bits (787), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 149/190 (78%), Positives = 166/190 (87%)

Query: 1   VTGDPGKMVAVQRNLKKFGIREIARTGKIALRREKMGEFAPFWRFSAASYPDLGEIRPDD 60
           VTGDPGKM AVQRN  KFGI+EIARTGKIALRREKMG  APFWR+SAASYPDL    P +
Sbjct: 108 VTGDPGKMAAVQRNFSKFGIKEIARTGKIALRREKMGASAPFWRYSAASYPDLEGRTPVN 167

Query: 61  APLGSKCRVVRGEDDTSVGGDVYPVEPSDDFKVAQVLDAHWGVLNEDDTTGLRSHTLSML 120
           A +G+K      + DT VGGDVYP+EPSD F V QVLDAHWGVLN++DT+G+RSHTLSML
Sbjct: 168 ALVGAKNMKPVAKLDTPVGGDVYPIEPSDGFTVNQVLDAHWGVLNDEDTSGIRSHTLSML 227

Query: 121 VNDAPGVLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLV 180
           VNDAPGVLNIVTGVFARRGYNIQSLAVGH+E EG+SR+TTVVPGTDESISKLVQQLYKLV
Sbjct: 228 VNDAPGVLNIVTGVFARRGYNIQSLAVGHAEVEGLSRLTTVVPGTDESISKLVQQLYKLV 287

Query: 181 ELHEVRNFSN 190
           ELHEVR+ ++
Sbjct: 288 ELHEVRDITH 297



 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 127 VLNIVTGVFARRGYNIQSLAVGHSETEGISRITTVVPGTDESISKLVQQLYKLVELHEVR 186
           ++N + GVFARRGYNI+SLAVG +E   +   T VV GTD+ + ++++QL KLV + +V 
Sbjct: 1   MINRIAGVFARRGYNIESLAVGLNEDRAL--FTIVVSGTDKVLRQVMEQLQKLVNVLKVE 58

Query: 187 NFSNQ 191
           + S +
Sbjct: 59  DLSRE 63


>Glyma04g14230.1 
          Length = 150

 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 43/80 (53%), Gaps = 21/80 (26%)

Query: 29  IALRREKMGEFAPFWRFSAASYPDLGEIRPDDAPLGSKCRVVRGEDDTSVGGDVYPVEPS 88
           IALR EKMG   PF+R+ A SYPDL                     +    GDVYP+EP 
Sbjct: 1   IALRTEKMGASTPFFRYLATSYPDL---------------------EGRTLGDVYPIEPP 39

Query: 89  DDFKVAQVLDAHWGVLNEDD 108
           D F V  VLDAHWGVLNE D
Sbjct: 40  DGFTVNHVLDAHWGVLNEQD 59