Jatropha Genome Database

JcCA0116061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0116061.10 - phase: 0 /partial
         (180 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g38530.1                                                       258   3e-69
Glyma20g29310.1                                                       239   8e-64

>Glyma10g38530.1 
          Length = 244

 Score =  258 bits (658), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 138/162 (85%), Gaps = 4/162 (2%)

Query: 9   TKKRKMGERREDGIGGKNSSSKTKWPLIKPKKNLQITRIKDTDLFTVQNFFTPAESKAFI 68
           T+KRKMG+ +E            KWPLIKPKKNLQI+R++D DLFTVQNFF+ AESKAF+
Sbjct: 6   TRKRKMGDTKERA----TKKPAAKWPLIKPKKNLQISRLRDFDLFTVQNFFSSAESKAFV 61

Query: 69  KAAESIGFVHQGSLGPTRGEAYRDNDRVSSNDSALANAVWESGLNKLFSDIKIRGKVAVG 128
           K AE IGF HQGSLGPT GEA+RDNDR+  +D  LA+ +WESGL+KLFSDIKIRGKVAVG
Sbjct: 62  KIAEEIGFTHQGSLGPTYGEAFRDNDRMLVDDPVLADTIWESGLSKLFSDIKIRGKVAVG 121

Query: 129 LNPNIRFYRYKVGQRFGRHIDESVDLGDGKRTHYTLLIYLSG 170
           LNPNIRFYRYKVGQRFGRHIDESVDLGDGKRT+YTLL+YLSG
Sbjct: 122 LNPNIRFYRYKVGQRFGRHIDESVDLGDGKRTYYTLLVYLSG 163


>Glyma20g29310.1 
          Length = 238

 Score =  239 bits (611), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/165 (70%), Positives = 132/165 (80%), Gaps = 7/165 (4%)

Query: 6   QTGTKKRKMGERREDGIGGKNSSSKTKWPLIKPKKNLQITRIKDTDLFTVQNFFTPAESK 65
           +  T+KRKMG+  E            KWPLIKPKKNLQI+ + D DLF+VQNFF+ AESK
Sbjct: 3   EKSTRKRKMGDTEETA----PKKPAAKWPLIKPKKNLQISHLLDFDLFSVQNFFSSAESK 58

Query: 66  AFIKAAESIGFVHQGSLGPTRGEAYRDNDRVSSNDSALANAVWESGLNKLFSDIKIRGKV 125
           AF+K AE IGF HQGS G   GEAYRDNDR+S +D  LA+ +WESGL+KLFSDIKIRGKV
Sbjct: 59  AFVKIAEEIGFAHQGSRG---GEAYRDNDRISVDDPVLADTIWESGLSKLFSDIKIRGKV 115

Query: 126 AVGLNPNIRFYRYKVGQRFGRHIDESVDLGDGKRTHYTLLIYLSG 170
           AVGLNPN+RFYRYKVGQRFGRH D SVDLGDGKRT+YTLL+YLSG
Sbjct: 116 AVGLNPNVRFYRYKVGQRFGRHFDASVDLGDGKRTYYTLLVYLSG 160