Jatropha Genome Database

JcCA0109411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0109411.10 + phase: 0 /partial
         (90 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g09260.4                                                       158   1e-39
Glyma08g09260.1                                                       158   1e-39
Glyma08g09260.3                                                       158   1e-39
Glyma08g09260.2                                                       158   1e-39
Glyma05g26350.1                                                       118   2e-27

>Glyma08g09260.4 
          Length = 185

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 83/90 (92%)

Query: 1   VVARFNEIVTKHLLEGALETFKKYSVKEEDVDVVWVPGSFEIGIVAERLGKSGNYHAILC 60
           VVARFNEIVTK LLEGAL TF  YSV++ED+DVVWVPGSFEIG+VAERLGKSG Y AI+C
Sbjct: 93  VVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVC 152

Query: 61  IGAVIRGDTTHYDAVANSAASGVLSAGINS 90
           IGAV+RGDTTHYDAVANSAASGVLSA +NS
Sbjct: 153 IGAVVRGDTTHYDAVANSAASGVLSASLNS 182


>Glyma08g09260.1 
          Length = 230

 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 83/90 (92%)

Query: 1   VVARFNEIVTKHLLEGALETFKKYSVKEEDVDVVWVPGSFEIGIVAERLGKSGNYHAILC 60
           VVARFNEIVTK LLEGAL TF  YSV++ED+DVVWVPGSFEIG+VAERLGKSG Y AI+C
Sbjct: 93  VVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVC 152

Query: 61  IGAVIRGDTTHYDAVANSAASGVLSAGINS 90
           IGAV+RGDTTHYDAVANSAASGVLSA +NS
Sbjct: 153 IGAVVRGDTTHYDAVANSAASGVLSASLNS 182


>Glyma08g09260.3 
          Length = 228

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 83/90 (92%)

Query: 1   VVARFNEIVTKHLLEGALETFKKYSVKEEDVDVVWVPGSFEIGIVAERLGKSGNYHAILC 60
           VVARFNEIVTK LLEGAL TF  YSV++ED+DVVWVPGSFEIG+VAERLGKSG Y AI+C
Sbjct: 91  VVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVC 150

Query: 61  IGAVIRGDTTHYDAVANSAASGVLSAGINS 90
           IGAV+RGDTTHYDAVANSAASGVLSA +NS
Sbjct: 151 IGAVVRGDTTHYDAVANSAASGVLSASLNS 180


>Glyma08g09260.2 
          Length = 228

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 83/90 (92%)

Query: 1   VVARFNEIVTKHLLEGALETFKKYSVKEEDVDVVWVPGSFEIGIVAERLGKSGNYHAILC 60
           VVARFNEIVTK LLEGAL TF  YSV++ED+DVVWVPGSFEIG+VAERLGKSG Y AI+C
Sbjct: 91  VVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVC 150

Query: 61  IGAVIRGDTTHYDAVANSAASGVLSAGINS 90
           IGAV+RGDTTHYDAVANSAASGVLSA +NS
Sbjct: 151 IGAVVRGDTTHYDAVANSAASGVLSASLNS 180


>Glyma05g26350.1 
          Length = 115

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 63/67 (94%), Gaps = 2/67 (2%)

Query: 24 YSVKEEDVDVVWVPGSFEIGIVAERLGKSGNYHAILCIGAVIRGDTTHYDAVANSAASGV 83
          YSV+ ED+DVVWVPGSFEIG+VAERLGKSG YHAI+CIGAV+RGDTTHYDAVANSA  GV
Sbjct: 2  YSVQVEDIDVVWVPGSFEIGVVAERLGKSGKYHAIICIGAVVRGDTTHYDAVANSA--GV 59

Query: 84 LSAGINS 90
          LSAG+NS
Sbjct: 60 LSAGLNS 66