Jatropha Genome Database

JcCA0098081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0098081.10 - phase: 0 /partial
         (129 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g29650.1                                                       125   9e-30
Glyma08g12760.1                                                       122   7e-29
Glyma15g27480.1                                                        86   1e-17
Glyma13g33970.2                                                        84   4e-17
Glyma13g33970.1                                                        83   7e-17
Glyma12g36280.1                                                        73   9e-14
Glyma14g12920.1                                                        52   1e-07

>Glyma05g29650.1 
          Length = 569

 Score =  125 bits (315), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 85/122 (69%), Gaps = 6/122 (4%)

Query: 2   MLRDEDIYTFFEPELPNEPPAKARC---RSLDPVTSHLPKVPCSRSRSKA-HLNKQRSMS 57
           + +DED+YTFFEPELP+E P   R    +S     S LPK+P +++ SKA    KQRS+S
Sbjct: 449 LAKDEDVYTFFEPELPSESPPLPRAMLSKSNSYRPSSLPKLPATKTGSKAAKYRKQRSLS 508

Query: 58  TLERNKVGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSDDVVI 117
            +E+ ++    WRP   D+I +HEGSSVLDL  +NYFSC V RKRS+ARYLL TSDDVV 
Sbjct: 509 NIEKREI--DQWRPKYRDKIALHEGSSVLDLNGDNYFSCVVGRKRSSARYLLKTSDDVVN 566

Query: 118 LL 119
           LL
Sbjct: 567 LL 568


>Glyma08g12760.1 
          Length = 881

 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 87/128 (67%), Gaps = 7/128 (5%)

Query: 2   MLRDEDIYTFFEPELPNEPPAKARC---RSLDPVTSHLPKVPCSRSRSK--AHLNKQRSM 56
           + +DED+Y FFEPELP+E P   R    +S     S L K+P +   S   A   KQRS+
Sbjct: 750 LAKDEDVYQFFEPELPSESPPVPRAMLSKSNSYRPSSLSKLPATTKTSSKAAQYKKQRSL 809

Query: 57  STLERNKVGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSDDVV 116
           S +E+ ++    WRP+  D+I +HEGSSVLDLK +NYFSC V RKRS+ARYLL TSDDVV
Sbjct: 810 SNIEKREL--DQWRPMCGDKIALHEGSSVLDLKGDNYFSCVVGRKRSSARYLLKTSDDVV 867

Query: 117 ILLKELAD 124
            LL++LA+
Sbjct: 868 NLLRDLAE 875


>Glyma15g27480.1 
          Length = 895

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 78/130 (60%), Gaps = 15/130 (11%)

Query: 4   RDEDIYTFFEPELPNEPPAKARCR-SLDPVTSHLPK-----VPCSRSRSKAHLNK-QRSM 56
           +DED+Y+FFEP+LP+      R + + D V   + +     VP ++S  K+  NK QRS+
Sbjct: 763 KDEDLYSFFEPDLPSIGVGLPRSKVTTDGVKFPVERKPSLNVPATKSGPKSFPNKAQRSV 822

Query: 57  STLER---NKVGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSD 113
           S  E+   N + +   RP         E  +VLDLK ENYFSCA+ R R+NARY+L +SD
Sbjct: 823 SNSEKKTNNHICSTPRRPAPEK-----ESWNVLDLKKENYFSCAIGRTRTNARYILDSSD 877

Query: 114 DVVILLKELA 123
           DVV  LKELA
Sbjct: 878 DVVSFLKELA 887


>Glyma13g33970.2 
          Length = 932

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 75/133 (56%), Gaps = 14/133 (10%)

Query: 2   MLRDEDIYTFFEPELPNEPPAKARCRSLDPVTSHLPKV-----PCSR---SRSKAHLNKQ 53
           + +DEDIY FFEPELP+      R +  + V   + +V     P SR   ++S +    Q
Sbjct: 803 LTKDEDIYAFFEPELPSIGVGLQRSKGTEGVKFPVERVSSLKNPASRNGAAKSSSQKKGQ 862

Query: 54  RSMSTLE--RNKVGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGT 111
           R +S  E  RN       R +  ++I      +VLDLK ENYFSCAV R ++NARY LG+
Sbjct: 863 RPVSNNEKKRNNHVCRGPRRLAPEKISW----NVLDLKKENYFSCAVGRTQTNARYTLGS 918

Query: 112 SDDVVILLKELAD 124
            D+VV  LKELA+
Sbjct: 919 PDEVVAFLKELAN 931


>Glyma13g33970.1 
          Length = 933

 Score = 83.2 bits (204), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 14/131 (10%)

Query: 4   RDEDIYTFFEPELPNEPPAKARCRSLDPVTSHLPKV-----PCSR---SRSKAHLNKQRS 55
           +DEDIY FFEPELP+      R +  + V   + +V     P SR   ++S +    QR 
Sbjct: 806 QDEDIYAFFEPELPSIGVGLQRSKGTEGVKFPVERVSSLKNPASRNGAAKSSSQKKGQRP 865

Query: 56  MSTLE--RNKVGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSD 113
           +S  E  RN       R +  ++I      +VLDLK ENYFSCAV R ++NARY LG+ D
Sbjct: 866 VSNNEKKRNNHVCRGPRRLAPEKISW----NVLDLKKENYFSCAVGRTQTNARYTLGSPD 921

Query: 114 DVVILLKELAD 124
           +VV  LKELA+
Sbjct: 922 EVVAFLKELAN 932


>Glyma12g36280.1 
          Length = 907

 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 21/122 (17%)

Query: 4   RDEDIYTFFEPELPNEPPAKARCRSLDPVTSHLPKVPCSRSRSKAHLNKQRSMSTLER-- 61
           +DEDIY FFEPELP       R +  + V   + +V  S+++       QR +S  E+  
Sbjct: 798 QDEDIYAFFEPELP-------RSKVTEGVKFPVERVSSSQNKG------QRPVSNSEKKT 844

Query: 62  -NKVGTPAWRPIQHDRIKMHEGSSVLDLKAENYFSCAVSRKRSNARYLLGTSDDVVILLK 120
            N V     RP   ++I      +VLDLK ENYFSCAV R ++NARY L + D+VV  LK
Sbjct: 845 NNHVCRLPRRPAP-EKISW----NVLDLKKENYFSCAVGRTQTNARYTLASPDEVVAFLK 899

Query: 121 EL 122
           EL
Sbjct: 900 EL 901


>Glyma14g12920.1 
          Length = 155

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 29/39 (74%)

Query: 84  SVLDLKAENYFSCAVSRKRSNARYLLGTSDDVVILLKEL 122
           +VLDLK ENYFSCAV R ++NARY L +  + V  LKEL
Sbjct: 114 NVLDLKKENYFSCAVGRTQTNARYTLASPYEFVAFLKEL 152