Jatropha Genome Database

JcCA0088981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0088981.10 + phase: 1 /pseudo/partial
         (118 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g33710.1                                                       110   3e-25
Glyma02g09630.2                                                       106   5e-24
Glyma02g09630.1                                                       106   5e-24
Glyma10g22680.1                                                       106   6e-24
Glyma20g33880.1                                                        86   1e-17
Glyma20g12510.1                                                        79   1e-15
Glyma04g39930.1                                                        56   1e-08
Glyma06g14960.1                                                        55   2e-08

>Glyma10g33710.1 
          Length = 244

 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/62 (83%), Positives = 57/62 (91%), Gaps = 1/62 (1%)

Query: 13  KKLVVVKSPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSA 71
            KLVV+KSPNAVNPLVW  Y PLLTIDVWEHAYYLDFQNRRPDYIS F++KLVSW+AVS+
Sbjct: 178 NKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSS 237

Query: 72  RL 73
           RL
Sbjct: 238 RL 239


>Glyma02g09630.2 
          Length = 310

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 58/62 (93%), Gaps = 1/62 (1%)

Query: 13  KKLVVVKSPNAVNPLVWDY-SPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSA 71
           KKLVVVK+PNAVNPLVW+Y  PLLTIDVWEHAY++DFQN+R DYIS F++KLVSW+AVS+
Sbjct: 204 KKLVVVKTPNAVNPLVWNYYHPLLTIDVWEHAYFIDFQNQRRDYISVFMDKLVSWDAVSS 263

Query: 72  RL 73
           RL
Sbjct: 264 RL 265


>Glyma02g09630.1 
          Length = 313

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 58/62 (93%), Gaps = 1/62 (1%)

Query: 13  KKLVVVKSPNAVNPLVWDY-SPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSA 71
           KKLVVVK+PNAVNPLVW+Y  PLLTIDVWEHAY++DFQN+R DYIS F++KLVSW+AVS+
Sbjct: 207 KKLVVVKTPNAVNPLVWNYYHPLLTIDVWEHAYFIDFQNQRRDYISVFMDKLVSWDAVSS 266

Query: 72  RL 73
           RL
Sbjct: 267 RL 268


>Glyma10g22680.1 
          Length = 272

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 58/62 (93%), Gaps = 1/62 (1%)

Query: 13  KKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSA 71
           KKLVVVK+PNAVNPLVW+Y  PLLTIDVWEHAY++DFQN+R DYIS F++KLVSW+AVS+
Sbjct: 167 KKLVVVKTPNAVNPLVWNYYYPLLTIDVWEHAYFIDFQNQRRDYISVFMDKLVSWDAVSS 226

Query: 72  RL 73
           RL
Sbjct: 227 RL 228


>Glyma20g33880.1 
          Length = 177

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 42/45 (93%)

Query: 29  WDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVSWEAVSARL 73
           W + PLLTIDVWEHAYYLDFQNRRPDYIS F++KLVSW+AVS+RL
Sbjct: 123 WAWLPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRL 167


>Glyma20g12510.1 
          Length = 262

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query: 6   LARQKRTKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEKLVS 65
           L  ++  K+L +VK+ NA+ P+VWD  P++ +D+WEHAYYLD++N R  Y+  F+  LVS
Sbjct: 178 LVLKREEKRLEIVKTSNAICPIVWDDIPIINLDLWEHAYYLDYRNDRAKYVDVFMNHLVS 237

Query: 66  WEAVSARL 73
           W+A   RL
Sbjct: 238 WDAAMGRL 245


>Glyma04g39930.1 
          Length = 240

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 6   LARQKRTKKLVVVKSPNAVNPLVW---DYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEK 62
           L   K  K+LVV  + N  +PLV    +  PLL IDVWEHAYYL ++N RPDY+   I K
Sbjct: 167 LGLDKELKRLVVETTANQ-DPLVTKGPNLVPLLGIDVWEHAYYLQYKNVRPDYLKN-IWK 224

Query: 63  LVSWEAVS 70
           +++W+  S
Sbjct: 225 VINWKYAS 232


>Glyma06g14960.1 
          Length = 241

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 6   LARQKRTKKLVVVKSPNAVNPLVW---DYSPLLTIDVWEHAYYLDFQNRRPDYISTFIEK 62
           L   K  K+LVV  + N  +PLV    +  PL+ IDVWEHAYYL ++N RPDY+   I K
Sbjct: 168 LGLDKELKRLVVETTANQ-DPLVTKGPNLVPLIGIDVWEHAYYLQYKNVRPDYLKN-IWK 225

Query: 63  LVSWEAVS 70
           +++W+  S
Sbjct: 226 VINWKYAS 233