Jatropha Genome Database

JcCA0087501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0087501.10 + phase: 0 /pseudo/partial
         (147 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g06930.1                                                        57   8e-09
Glyma03g16680.1                                                        52   2e-07
Glyma17g29390.1                                                        52   3e-07
Glyma20g22670.1                                                        52   3e-07

>Glyma03g06930.1 
          Length = 128

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 40/73 (54%)

Query: 47  ISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKSIWIPFRYEVLPNFCFL 106
           +  F+ WD       GK +  R L+D+ KPL RG M+K+   ++  I F+YE L N C++
Sbjct: 53  LGSFIKWDQSEEYRVGKSMRVRILMDITKPLRRGVMMKIGVKEAREIIFKYERLGNICYM 112

Query: 107 DGRCGHTYRSCDD 119
            G   H  + C+D
Sbjct: 113 CGFLDHLLKECED 125


>Glyma03g16680.1 
          Length = 140

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 39  MAKILNRKISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKSIWIPFRYE 98
           +  ++   I  FM WD       GK +  R  +D+ KPL RG  +K+  G    I F+Y+
Sbjct: 20  VVTLVGNSIGGFMEWDKGDKSRFGKVMRVRVSMDVGKPLKRGMFIKMGKGIQRKIFFKYK 79

Query: 99  VLPNFCFLDGRCGHTYRSCD 118
            L NFC+  G   H  + C+
Sbjct: 80  RLGNFCYTCGGLDHVLKECE 99


>Glyma17g29390.1 
          Length = 138

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 40/88 (45%)

Query: 40  AKILNRKISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKSIWIPFRYEV 99
             I+   +   + WD+      G  I  R L+D+ KPL RG M+           F+YE+
Sbjct: 43  TSIVGNALGKIIDWDASEESRLGTTIGVRVLIDICKPLKRGMMIGCGENGPKKSFFKYEI 102

Query: 100 LPNFCFLDGRCGHTYRSCDDYDFGEPYN 127
           L NFC+  G   H ++ C + D G   N
Sbjct: 103 LGNFCYCCGSLDHNFKKCKERDGGAKEN 130


>Glyma20g22670.1 
          Length = 274

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%)

Query: 39  MAKILNRKISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKSIWIPFRYE 98
           +A ++   +  F+ WD       G FI  + ++D+ KPL +G  +KL   K   +  +Y+
Sbjct: 36  VATMIEGALGEFVEWDGREESWLGLFICIKVMIDISKPLRKGLQLKLGGKKPRRLRVKYD 95

Query: 99  VLPNFCFLDGRCGHTYRSCDD 119
            L NFC+  GR  H  + C++
Sbjct: 96  RLSNFCYACGRMDHVLKECEE 116