Jatropha Genome Database

JcCA0081341.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081341.40 + phase: 0 
         (156 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g35360.1                                                       235   2e-62
Glyma19g37990.1                                                       234   3e-62
Glyma06g16990.1                                                       120   6e-28
Glyma04g38080.1                                                        62   3e-10

>Glyma03g35360.1 
          Length = 167

 Score =  235 bits (599), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 107/150 (71%), Positives = 134/150 (89%)

Query: 6   SSCEQKLQPRKLEISDKSKGFVELLQQLTICDSVSDEEFEKRFQEISTYGDDHLICVVED 65
           +S EQK + R+LEISDK KGF+ELLQQL++CDSVSD+EFE RF+++S  GD+H+I V+ED
Sbjct: 17  NSEEQKYRVRRLEISDKGKGFIELLQQLSVCDSVSDKEFEDRFRDLSVLGDEHVIGVIED 76

Query: 66  DHTGKIIATGSVFIEKKFIRNCGKVGHIEDIVVDSNARGRHLGKKIVEFLTDHAHSVGCY 125
           + +GKIIATGSVFIEKKF+RNCGKVGHIED+VVDS+ RG+HLGK+++EFLT+HA  +GCY
Sbjct: 77  EASGKIIATGSVFIEKKFLRNCGKVGHIEDVVVDSSIRGKHLGKRMIEFLTEHARDMGCY 136

Query: 126 KVILDCSIENKPFYEKCGFKQKEIQMVKYF 155
           KVILDCS+ENK FYEKCGF+QK +QM  YF
Sbjct: 137 KVILDCSVENKAFYEKCGFQQKSVQMAMYF 166


>Glyma19g37990.1 
          Length = 154

 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 108/151 (71%), Positives = 134/151 (88%)

Query: 5   SSSCEQKLQPRKLEISDKSKGFVELLQQLTICDSVSDEEFEKRFQEISTYGDDHLICVVE 64
           +S  +QK + RKLEISDK KGF+ELLQQL++CDSVSD+EFE RF+++   GDDH+I V+E
Sbjct: 3   NSEEQQKYRVRKLEISDKGKGFIELLQQLSVCDSVSDKEFEDRFRDLDVLGDDHVIGVIE 62

Query: 65  DDHTGKIIATGSVFIEKKFIRNCGKVGHIEDIVVDSNARGRHLGKKIVEFLTDHAHSVGC 124
           D+ +GKIIATGSVFIEKKF+RNCGKVGHIED+VVDS+ RG+HLGK+I++FLT+HA S+GC
Sbjct: 63  DEASGKIIATGSVFIEKKFLRNCGKVGHIEDVVVDSSIRGKHLGKRIIKFLTEHARSMGC 122

Query: 125 YKVILDCSIENKPFYEKCGFKQKEIQMVKYF 155
           YKVILDCS+ENK FYEKCGF+QK +QM  YF
Sbjct: 123 YKVILDCSVENKAFYEKCGFQQKSVQMAMYF 153


>Glyma06g16990.1 
          Length = 75

 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 52/74 (70%), Positives = 65/74 (87%)

Query: 79  IEKKFIRNCGKVGHIEDIVVDSNARGRHLGKKIVEFLTDHAHSVGCYKVILDCSIENKPF 138
           +EKKF+RNC KV HIEDIVVDS+ RG+HLGK+I+ FL+DHA S+GCYK+IL+CS++NK F
Sbjct: 1   MEKKFLRNCSKVRHIEDIVVDSSIRGKHLGKRIINFLSDHARSMGCYKLILNCSVQNKTF 60

Query: 139 YEKCGFKQKEIQMV 152
           YEKCGF QK +QM 
Sbjct: 61  YEKCGFLQKSVQMA 74


>Glyma04g38080.1 
          Length = 153

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 83  FIRNCGKVGHIEDI-VVDSNARGRHLGKKIVEFLTDHAHSVGCYKVILDCSIENKPFYEK 141
            +  C ++ H+  +  VDS A    +   I   L +H  S+GCYKVILDCS+ENK FYEK
Sbjct: 69  LVLRCAQLQHVIFVSAVDSLASRSFIFCSIFNKL-EHTRSMGCYKVILDCSVENKAFYEK 127

Query: 142 CGFKQKEIQMVKY 154
            GF+QK +QM  +
Sbjct: 128 RGFQQKSVQMAVF 140