Jatropha Genome Database

JcCA0081161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0081161.20 - phase: 0 
         (367 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g00340.1                                                       489   e-138
Glyma02g48140.1                                                        55   2e-07

>Glyma14g00340.1 
          Length = 360

 Score =  489 bits (1260), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/359 (69%), Positives = 286/359 (79%), Gaps = 4/359 (1%)

Query: 3   AICFLSPVKPITFSSSVHSKRSPLFRCNFSLPTITTTEPEPVYTSVRSFAPATVANLGPG 62
           + CFL P    T S    ++     RC+ S+      EPEPV T V++FAPATVANLGPG
Sbjct: 4   STCFLCPS---TASLKGRARFRIRIRCSSSVSVNIRREPEPVTTLVKAFAPATVANLGPG 60

Query: 63  FDFLGCAVDGLGDFVSVRIDPSVHPGEISISDITGNHACKKLSKDPLRNCAGISAIATMK 122
           FDFLGCAVDGLGD VSV++DP VHPGEI ISDI+G HA  KLSK+PL NCAGI+AI  MK
Sbjct: 61  FDFLGCAVDGLGDIVSVKVDPQVHPGEICISDISG-HAPNKLSKNPLWNCAGIAAIEVMK 119

Query: 123 MLNIRSVGLSLTLEKGLPXXXXXXXXXXXXXXXXXXXNEIFGGKLEVKDLILAGLESEAK 182
           ML+IRSVGLSL+LEKGLP                   NE+FG KL V++L+LA L+SE K
Sbjct: 120 MLSIRSVGLSLSLEKGLPLGSGLGSSAASAAAAAVAVNELFGKKLSVEELVLASLKSEEK 179

Query: 183 VSGYHADNIAPAIMGGFVLINSYDPLELMSLKFPGEKELFFVLVTPEFEAPTKKMRAALP 242
           VSGYHADN+AP+IMGGFVLI SY PLELM LKFP EKEL+FVLVTPEFEAPTKKMRAALP
Sbjct: 180 VSGYHADNVAPSIMGGFVLIGSYSPLELMPLKFPAEKELYFVLVTPEFEAPTKKMRAALP 239

Query: 243 EEIGMPHHVWNCSQAGALVASVLQGDLMGLGKALSNDKIVEPKRAPLIPGMEEVKKAAIR 302
            EIGMPHHVWNCSQAGALVASVLQGD++GLGKALS+DKIVEP+RAPLIPGME VK+AAI+
Sbjct: 240 TEIGMPHHVWNCSQAGALVASVLQGDVVGLGKALSSDKIVEPRRAPLIPGMEAVKRAAIQ 299

Query: 303 AGAFGCTISGAGPTAVAVIDNEERGKEIGERMVEAFLKEGNLKAVSLVKRLDRVGARLI 361
           AGAFGCTISGAGPTAVAVID+E+ G  I + M++AFL  GNLKA + VK+LDR+GAR I
Sbjct: 300 AGAFGCTISGAGPTAVAVIDDEQTGHLIAKHMIDAFLHVGNLKASANVKQLDRLGARRI 358


>Glyma02g48140.1 
          Length = 164

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 274 KALSNDKIVEPKRAPLIPGMEEVKKAAIRAGAFGCTISGAGPTAVAVIDNEERGKEIGER 333
           K + N +I E +  P  P     ++     G      SG     VAVIDNE+ G  I + 
Sbjct: 76  KGVINYEINE-QETPTHPQELRWRRRRKHGGCQEGCHSGWWFWLVAVIDNEQTGHLIAQH 134

Query: 334 MVEAFLKEGNLKAVSLVKRLDRVGARLI 361
           M+ +FLK+G LKA + +K+LDR+G+R I
Sbjct: 135 MIHSFLKDGYLKASANLKQLDRLGSRRI 162