Jatropha Genome Database

JcCA0080721.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.40 - phase: 2 /pseudo/partial
         (176 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g01990.1                                                       154   3e-38
Glyma09g39980.2                                                       136   1e-32
Glyma18g46240.1                                                       135   2e-32
Glyma09g39980.3                                                       135   2e-32
Glyma09g39980.1                                                       135   2e-32

>Glyma03g01990.1 
          Length = 260

 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 85/109 (77%)

Query: 8   MVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALIMDSF 67
           MVMGAFIPGLRRKYP HEY+SAV           ADA+TSPNFS IGV+MISGALIMDSF
Sbjct: 25  MVMGAFIPGLRRKYPFHEYVSAVLLVIGLILFTLADAQTSPNFSAIGVLMISGALIMDSF 84

Query: 68  LGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           LGNLQEAIFTMNP+TTQ L++ G+A L    G AFLD SHAF RRV ++
Sbjct: 85  LGNLQEAIFTMNPQTTQELYSYGNAFLLYCGGIAFLDSSHAFHRRVFKA 133


>Glyma09g39980.2 
          Length = 325

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 79/113 (69%), Gaps = 4/113 (3%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA+           ADA+TSPNFS+IGV+MISGAL+
Sbjct: 87  VLPVMIMGAFIPGLRRKYPLHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALV 146

Query: 64  MDSFLGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           MDSFLGNLQEAIFTMNPETTQ        V+    G  FL P   F   + ++
Sbjct: 147 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVV----GLPFLIPPMLFTGELFKA 195


>Glyma18g46240.1 
          Length = 358

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 79/113 (69%), Gaps = 4/113 (3%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA+           ADA+TSPNFS+IGV+MISGAL+
Sbjct: 120 VLPVMIMGAFIPGLRRKYPLHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALV 179

Query: 64  MDSFLGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           MDSFLGNLQEAIFTMNPETTQ        V+    G  FL P   F   + ++
Sbjct: 180 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVV----GLPFLIPPMLFTGELFKA 228


>Glyma09g39980.3 
          Length = 358

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 79/113 (69%), Gaps = 4/113 (3%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA+           ADA+TSPNFS+IGV+MISGAL+
Sbjct: 120 VLPVMIMGAFIPGLRRKYPLHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALV 179

Query: 64  MDSFLGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           MDSFLGNLQEAIFTMNPETTQ        V+    G  FL P   F   + ++
Sbjct: 180 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVV----GLPFLIPPMLFTGELFKA 228


>Glyma09g39980.1 
          Length = 365

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 79/113 (69%), Gaps = 4/113 (3%)

Query: 4   VLPVMVMGAFIPGLRRKYPAHEYISAVXXXXXXXXXXXADAKTSPNFSIIGVVMISGALI 63
           VLPVM+MGAFIPGLRRKYP HEYISA+           ADA+TSPNFS+IGV+MISGAL+
Sbjct: 127 VLPVMIMGAFIPGLRRKYPLHEYISAILLVVGLILFTLADAQTSPNFSMIGVIMISGALV 186

Query: 64  MDSFLGNLQEAIFTMNPETTQFLFTDGDAVLFKRSGFAFLDPSHAFDRRVIQS 116
           MDSFLGNLQEAIFTMNPETTQ        V+    G  FL P   F   + ++
Sbjct: 187 MDSFLGNLQEAIFTMNPETTQMEMLFCSTVV----GLPFLIPPMLFTGELFKA 235