Jatropha Genome Database

JcCA0080621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080621.10 + phase: 0 /partial
         (268 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g02520.1                                                       274   7e-74
Glyma02g17280.1                                                       233   2e-61

>Glyma10g02520.1 
          Length = 490

 Score =  274 bits (700), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 150/256 (58%), Positives = 177/256 (69%), Gaps = 30/256 (11%)

Query: 4   GGSILGIKFLDPLAGLVVSGMILKAGLEIGYQSVFELVDAAIPAEDLDPVRQTILQVEGV 63
           GGSILG+KFLDPLAGL+VSGMILKAG E GYQSV ELVDAAIPA+ LDP++QTILQV+GV
Sbjct: 260 GGSILGVKFLDPLAGLLVSGMILKAGAETGYQSVLELVDAAIPAQHLDPIKQTILQVDGV 319

Query: 64  KGCHRLRGRRAGSSLHLDVHIEVDPFSSVSAAHGIGEKVRQEIHKCHPGIAEVFIHIGFS 123
           KGCH LRGRRAGS L+LDVHIEVDPFSSVSAAH IGE VR +IHK HP + EVFIHI  +
Sbjct: 320 KGCHCLRGRRAGSYLYLDVHIEVDPFSSVSAAHDIGENVRHQIHKSHPTVVEVFIHIDPA 379

Query: 124 PCEID-LHNNVEETANENRNVSLEDRDIEMIVSNVFQSKFPERMEVERITRHCLQSKMLV 182
                   ++     N++  V  ED +IE IVS++  S FP+ M VERI RH  QSK+++
Sbjct: 380 MSHASHQRDSWSGDMNQSSIVPAEDSNIEGIVSDIISSNFPQ-MSVERIARHMFQSKIVL 438

Query: 183 EIEVSMPPEILIRYIIQPAHDVCYCSMQHLPLLHACVITNRDAKEVANAAEKEILKAASN 242
           +IEVSMPP+I                    P+ HA         E+A  AEKEI KA SN
Sbjct: 439 QIEVSMPPDI--------------------PIGHAM--------EMAKLAEKEIFKAVSN 470

Query: 243 IMTVRIQLRLGHPFPK 258
            + V IQLRLG PFP+
Sbjct: 471 TIHVSIQLRLGQPFPQ 486


>Glyma02g17280.1 
          Length = 212

 Score =  233 bits (594), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/238 (54%), Positives = 159/238 (66%), Gaps = 31/238 (13%)

Query: 24  MILKAGLEIGYQSVFELVDAAIPAEDLDPVRQTILQVEGVKGCHRLRGRRAGSSLHLDVH 83
           MILKAG E GYQSV ELVDAAIP + LDP++QTILQV+GVKGCHRLRGRRAGS L+LDVH
Sbjct: 1   MILKAGAETGYQSVLELVDAAIPEQHLDPIKQTILQVDGVKGCHRLRGRRAGSYLYLDVH 60

Query: 84  IEVDPFSSVSAAHGIGEKVRQEIHKCHPGIAEVFIHIGFSPCEIDLHNNVEETANENRNV 143
           IEVDPFSSVSAAH IGE VR +IHK HP + EVFIHI  +   +    +      ++ ++
Sbjct: 61  IEVDPFSSVSAAHDIGENVRHQIHKSHPTVVEVFIHIDPAMSHVSCQQDSWSGGMDHSSI 120

Query: 144 --SLEDRDIEMIVSNVFQSKFPERMEVERITRHCLQSKMLVEIEVSMPPEILIRYIIQPA 201
             + ED +I+ IVS++  S FP+ M VE ITRH  QSK++++IEVSMPP+I         
Sbjct: 121 VPAEEDSNIKGIVSDIISSNFPQ-MSVECITRHMFQSKIVLQIEVSMPPDI--------- 170

Query: 202 HDVCYCSMQHLPLLHACVITNRDAKEVANAAEKEILKAASNIMTVRIQLRLGHPFPKF 259
                      P+ HA         E+A  AE+EILKA SN + V IQLRLG PFP+ 
Sbjct: 171 -----------PIGHAM--------EMAKQAEEEILKAVSNTIHVGIQLRLGQPFPQI 209