Jatropha Genome Database

JcCA0080591.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080591.20 + phase: 0 
         (440 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g17590.1                                                       242   6e-64
Glyma06g21390.1                                                        70   3e-12
Glyma01g30510.1                                                        52   1e-06

>Glyma08g17590.1 
          Length = 304

 Score =  242 bits (617), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 155/354 (43%), Positives = 200/354 (56%), Gaps = 82/354 (23%)

Query: 60  AVAEIIVRRHFDSQILPAMLCAIAELASDRQLLATRYDKKTKQTTVGIMQLLPATMEWLI 119
           AVA+II+ +HF S+I P M+CAIAEL SDRQLL      K+K+ TVG+MQLLP T EWL+
Sbjct: 1   AVADIIITKHFHSEIDPDMICAIAELESDRQLLVMNSRHKSKEPTVGLMQLLPKTTEWLM 60

Query: 120 RD----------LGYRVYKGEGNPDILYRPFVSVYFGAAYLQWLSNFERQERSEEFVVRA 169
           R           LG  +  G  NP+            + ++Q        +RSEEF+VRA
Sbjct: 61  RKASPGAAVKLCLGDLLVMG-SNPET----------ASLHMQ-------GKRSEEFIVRA 102

Query: 170 YKGGIEKANHKSTLQHWKRYLSVKESLPSRRFVDDG----------PSVDNXXXXXXXXX 219
           YKGG +KA HKSTL++W  YLSVKES  SR+ VDD           PS++N         
Sbjct: 103 YKGGTKKATHKSTLRYWNCYLSVKESFRSRKSVDDNVSPPAHSHPLPSLEN--------- 153

Query: 220 XXXXXXXXXXXXXQKTGGDYVYWDSRASPEDMQEMWNNSDVAREWIKSGEKRGKVRFSLD 279
                         K      YWDSR +PEDM+ MWN+ +V +EW KS +K+GKVRF+ D
Sbjct: 154 -------------SKDASVDTYWDSRVAPEDMEAMWNHLEVRKEWNKSKQKQGKVRFAHD 200

Query: 280 KDKRLYLSRVEVKIDLIQAVAQTILSKHFSTRGVKPSVLCALAEM-----VSFRFVNGVG 334
           + KR YLSRVE+K     A+A  IL K+ ST  +K   +  L  +     +S RF++   
Sbjct: 201 EKKRPYLSRVEMK-----AIADIILYKYLSTVKIKSFRVIKLTNLQRRKEISIRFLSR-- 253

Query: 335 PQIGLMGID-YSTA-----FWLYMELGYRAYRVDSVDDLTKPFVSMYFGAAYLA 382
               +M  + YS       FW   ELGYRAYR++SVDDL  PFVSMYFGAAY+A
Sbjct: 254 -HYEIMKFNKYSKMPLKRDFW---ELGYRAYRLESVDDLNNPFVSMYFGAAYVA 303



 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 9/147 (6%)

Query: 7   YWDECVEPQDMEAMWREPEVLTEWLDAGETKGQKVHLSRDPDGQPYLTQTEMKAVAEIIV 66
           YWD  V P+DMEAMW   EV  EW  + + +G KV  + D   +PYL++ EMKA+A+II+
Sbjct: 162 YWDSRVAPEDMEAMWNHLEVRKEWNKSKQKQG-KVRFAHDEKKRPYLSRVEMKAIADIIL 220

Query: 67  RRHFDSQILPAMLCAIAELASDRQLLATRYDKKTKQTTVGIMQLLPATMEWLIRD---LG 123
            ++  +  + +           R+ ++ R+  +  +    IM+    +   L RD   LG
Sbjct: 221 YKYLSTVKIKSFRVIKLTNLQRRKEISIRFLSRHYE----IMKFNKYSKMPLKRDFWELG 276

Query: 124 YRVYKGEGNPDILYRPFVSVYFGAAYL 150
           YR Y+ E   D L  PFVS+YFGAAY+
Sbjct: 277 YRAYRLESVDD-LNNPFVSMYFGAAYV 302


>Glyma06g21390.1 
          Length = 131

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 42/52 (80%), Gaps = 1/52 (1%)

Query: 241 YWDSRASPEDMQEMWNNSDVAREWIKSGEKRGKVRFSLDKDKRLYLSRVEVK 292
           YW SR +PEDM+ MWN+ +V +EW KS +K+GKVRF+ D +KR YLSRVE+K
Sbjct: 42  YWHSRVAPEDMEAMWNHLEVRKEWNKSKQKQGKVRFAHD-EKRPYLSRVEMK 92


>Glyma01g30510.1 
          Length = 105

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 28/34 (82%)

Query: 159 QERSEEFVVRAYKGGIEKANHKSTLQHWKRYLSV 192
           ++RSEEF+VRAYKGG +K  HKSTL +W  YLS+
Sbjct: 11  RKRSEEFIVRAYKGGTKKETHKSTLCYWNCYLSM 44