Jatropha Genome Database

JcCA0080571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080571.10 + phase: 0 /partial
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g42630.1                                                       166   4e-42
Glyma10g42630.2                                                       166   4e-42
Glyma20g24400.1                                                       165   1e-41
Glyma20g24400.3                                                       165   1e-41
Glyma20g24400.2                                                        51   3e-07

>Glyma10g42630.1 
          Length = 420

 Score =  166 bits (421), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 91/115 (79%), Gaps = 4/115 (3%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSYVIGDKSILKDAGIQEIK 60
           VAYTFDAGPNAVLIA+NRK A           PPNSD DL+SY+IGDKSI KDAGI  I+
Sbjct: 307 VAYTFDAGPNAVLIARNRKAATSLIQRLLYYFPPNSD-DLSSYIIGDKSIAKDAGINGIQ 365

Query: 61  DVEALPPPPEIKDA---SRYKGDVSYFICTRPGRGPVLLSDESHALLNPETGLPK 112
           DVEALPPPPEIKD     +YKGDVSYFICTRPGRGPVLLSD S ALLN ETGLPK
Sbjct: 366 DVEALPPPPEIKDNIPPQKYKGDVSYFICTRPGRGPVLLSDSSQALLNGETGLPK 420


>Glyma10g42630.2 
          Length = 388

 Score =  166 bits (421), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 91/115 (79%), Gaps = 4/115 (3%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSYVIGDKSILKDAGIQEIK 60
           VAYTFDAGPNAVLIA+NRK A           PPNSD DL+SY+IGDKSI KDAGI  I+
Sbjct: 275 VAYTFDAGPNAVLIARNRKAATSLIQRLLYYFPPNSD-DLSSYIIGDKSIAKDAGINGIQ 333

Query: 61  DVEALPPPPEIKDA---SRYKGDVSYFICTRPGRGPVLLSDESHALLNPETGLPK 112
           DVEALPPPPEIKD     +YKGDVSYFICTRPGRGPVLLSD S ALLN ETGLPK
Sbjct: 334 DVEALPPPPEIKDNIPPQKYKGDVSYFICTRPGRGPVLLSDSSQALLNGETGLPK 388


>Glyma20g24400.1 
          Length = 421

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 91/115 (79%), Gaps = 4/115 (3%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSYVIGDKSILKDAGIQEIK 60
           VAYTFDAGPNAVLIA+NRK A           PPNSD DL+SY+IGDKSI KDAGI  I+
Sbjct: 308 VAYTFDAGPNAVLIARNRKAATSLIQRLLYYFPPNSD-DLSSYIIGDKSIAKDAGINGIQ 366

Query: 61  DVEALPPPPEIKD---ASRYKGDVSYFICTRPGRGPVLLSDESHALLNPETGLPK 112
           DVEALPPPPEIKD   + +YKGDVSYFICTRPGRGPVLLSD   ALLN ETGLPK
Sbjct: 367 DVEALPPPPEIKDNIPSQKYKGDVSYFICTRPGRGPVLLSDSIQALLNDETGLPK 421


>Glyma20g24400.3 
          Length = 420

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 91/115 (79%), Gaps = 4/115 (3%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSYVIGDKSILKDAGIQEIK 60
           VAYTFDAGPNAVLIA+NRK A           PPNSD DL+SY+IGDKSI KDAGI  I+
Sbjct: 307 VAYTFDAGPNAVLIARNRKAATSLIQRLLYYFPPNSD-DLSSYIIGDKSIAKDAGINGIQ 365

Query: 61  DVEALPPPPEIKD---ASRYKGDVSYFICTRPGRGPVLLSDESHALLNPETGLPK 112
           DVEALPPPPEIKD   + +YKGDVSYFICTRPGRGPVLLSD   ALLN ETGLPK
Sbjct: 366 DVEALPPPPEIKDNIPSQKYKGDVSYFICTRPGRGPVLLSDSIQALLNDETGLPK 420


>Glyma20g24400.2 
          Length = 349

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 1   VAYTFDAGPNAVLIAQNRKTAAXXXXXXXXXXPPNSDTDLNSY 43
           VAYTFDAGPNAVLIA+NRK A           PPNSD DL+ +
Sbjct: 308 VAYTFDAGPNAVLIARNRKAATSLIQRLLYYFPPNSD-DLSRF 349