Jatropha Genome Database

JcCA0080501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080501.10 + phase: 0 /partial
         (85 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g35330.1                                                       167   2e-42
Glyma20g32180.1                                                       165   8e-42

>Glyma10g35330.1 
          Length = 188

 Score =  167 bits (424), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/80 (93%), Positives = 80/80 (100%)

Query: 1   MIFTCKVCETRSIKTACRDSYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARG 60
           M+FTCKVCETRSIKTACR+SYEKGVVVARCGGCNNLHLIADHLGWFGEPGS+EDFLAARG
Sbjct: 106 MVFTCKVCETRSIKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSVEDFLAARG 165

Query: 61  EEVKKGSIDTLNLTLEDLAG 80
           EEVK+GS+DTLNLTLEDLAG
Sbjct: 166 EEVKRGSVDTLNLTLEDLAG 185


>Glyma20g32180.1 
          Length = 189

 Score =  165 bits (418), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 74/80 (92%), Positives = 79/80 (98%)

Query: 1   MIFTCKVCETRSIKTACRDSYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARG 60
           M+FTCKVCETRSIKT CR+SYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLA+RG
Sbjct: 107 MVFTCKVCETRSIKTVCRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLASRG 166

Query: 61  EEVKKGSIDTLNLTLEDLAG 80
           EEVK+GS+DTLNLTLEDLAG
Sbjct: 167 EEVKRGSVDTLNLTLEDLAG 186