Jatropha Genome Database

JcCA0080281.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080281.20 + phase: 0 
         (322 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g25700.1                                                       450   e-126
Glyma08g43910.1                                                        61   2e-09
Glyma17g13630.1                                                        57   2e-08
Glyma15g35770.1                                                        54   2e-07

>Glyma13g25700.1 
          Length = 327

 Score =  450 bits (1157), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 260/327 (79%), Gaps = 5/327 (1%)

Query: 1   MDCWKGILKVPVDPTSRSYCRVAVSLCLSPSSKSLTVPSANAIFFSGDRVEGTENPVIER 60
           M+ W G+L+VP+ P SR++ RV  SLCLSP +++L VP ANAIFF GDRVEGT NPVIER
Sbjct: 1   MERWSGVLRVPLHPNSRTFHRVGASLCLSPETRTLLVPKANAIFFCGDRVEGTGNPVIER 60

Query: 61  LSDLQKIAEILVSKFGGSVNAWVIEASSFNGPFAVYKDFIPSVNCWGEPKSYSPAGFPAS 120
           LS+LQK++EI+VSKFG   NAWVIEAS+FNGPFAVYKDFIPSVN +GEP SY P GFPAS
Sbjct: 61  LSNLQKLSEIIVSKFGSFTNAWVIEASAFNGPFAVYKDFIPSVNQYGEPSSYHPNGFPAS 120

Query: 121 TSTISLLSNCIREAKKVISTKEKDPISASASSASFYEPKTYILGFSKGGIVLNQLVAELS 180
           TST+SLLSNC+ EAKKVI   + D  S  + S SF   KT+ILGFSKGG VLNQ+V EL 
Sbjct: 121 TSTVSLLSNCLEEAKKVILGTQVDTKSGLSPSCSFSRSKTFILGFSKGGAVLNQIVTELG 180

Query: 181 VSEVKLNSKE----QHMNRK-CSQEDIQIIPRSKESLLNSITEIHYVDVGLNSAGAYITD 235
            S++  N+      Q M RK    E+I ++P++KE LLNSI+EIHYVDVGLNSAGAY+T+
Sbjct: 181 FSDIGSNANSPDVGQLMGRKFAGSEEIYVVPKTKEDLLNSISEIHYVDVGLNSAGAYLTN 240

Query: 236 HNVIERISKRLTQGAPGIRFVLHGTPRQWCDSRRVLIRNEKDKLVHLLQSEARRSGGKLK 295
           H+V ERISKRL QGA  +RF+LHGTPRQW D RR  IRNEKDK++ LL+SEA +SGGKLK
Sbjct: 241 HDVFERISKRLMQGASELRFILHGTPRQWSDKRRDWIRNEKDKMLRLLESEAPKSGGKLK 300

Query: 296 VCEKFYFADRPPDLQMHFEIIQSMDVS 322
           V E+FYF D+PP +QMHFEII+S+D S
Sbjct: 301 VLERFYFTDKPPSMQMHFEIIESLDAS 327


>Glyma08g43910.1 
          Length = 41

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 60  RLSDLQKIAEILVSKFGGSVNAWVIEASSFNGPFAVYKDFI 100
           RLS+LQK++EI +S  G  +NAWV EAS FN PFAVYKDFI
Sbjct: 1   RLSNLQKLSEIGLSNLGSFINAWVTEASVFNEPFAVYKDFI 41


>Glyma17g13630.1 
          Length = 72

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 5/65 (7%)

Query: 159 KTYILGFSKGGIVLNQLVAELSVSEVKLNSKEQHM----NRK-CSQEDIQIIPRSKESLL 213
           KT+ILGF KGG VLNQ+V EL  S++  N     +    +RK  S E+I  +P +KE LL
Sbjct: 1   KTFILGFRKGGTVLNQIVTELGFSDIGFNVNSPGVGHPKDRKFSSSEEIYAVPETKEGLL 60

Query: 214 NSITE 218
           N+I+E
Sbjct: 61  NNISE 65


>Glyma15g35770.1 
          Length = 60

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/35 (71%), Positives = 26/35 (74%)

Query: 74  KFGGSVNAWVIEASSFNGPFAVYKDFIPSVNCWGE 108
           KFG    AWV EAS FNG FAVYKDFI SVN +GE
Sbjct: 1   KFGSFTIAWVFEASVFNGTFAVYKDFIASVNQYGE 35