Jatropha Genome Database

JcCA0079871.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079871.20 - phase: 2 /pseudo/partial
         (372 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g34700.1                                                       421   e-118
Glyma10g16370.1                                                       194   9e-50
Glyma10g16340.1                                                       171   2e-42
Glyma02g34660.1                                                       135   7e-32
Glyma04g36610.2                                                        72   1e-12
Glyma04g36610.1                                                        72   1e-12

>Glyma02g34700.1 
          Length = 512

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/434 (53%), Positives = 269/434 (61%), Gaps = 65/434 (14%)

Query: 4   APAKGRKSDLVSALKFFVSKHLDGXXXXXXXXXXXXTCTEKLSLQKGATNVSDE----KL 59
            PAKGRK DL+SALK F+  ++                +E  S++  A  V DE     +
Sbjct: 79  VPAKGRKDDLLSALKSFMDNNMCEQDSHLQEKQGLLISSENASVEVKAKTVLDEDHIENV 138

Query: 60  NTVSEDLCFKQSKRRVKQSVA------------VGTNESV----------------KVDS 91
           N   E     Q KRR+ QS +            +  N                   KV S
Sbjct: 139 NETPEISELNQGKRRLNQSESERKTIKVTTKKKLRINHQYYMVFSPPDFKPSRAKKKVSS 198

Query: 92  EMSTIK-EKDSVKREEVSAEPWTILAHKKPQKGWIPYNPGTMRPPPPAGDTKFVKLMSWN 150
           + ++I  + + +    +  EPWT+LAHKKPQKGWI YNP TMRPP  A DTKFVKL+SWN
Sbjct: 199 DFASIVVQSEEISTATIQTEPWTVLAHKKPQKGWIAYNPRTMRPPSLAQDTKFVKLLSWN 258

Query: 151 VNGLRALLKSEGFSALELAQRENFD----------EKDVESIKHCLIDGYDSSFWTCSRS 200
           VNGLRALLK EGFSAL+LAQRE+FD          EKD+E IK  LIDGY +SFWTCS S
Sbjct: 259 VNGLRALLKLEGFSALQLAQREDFDVLCLQETKLQEKDIEEIKQRLIDGYANSFWTCSVS 318

Query: 201 KLGYSGTAIISRIKPISVSYGLGIPDHDSEGRLVTAEFDSFYLISAYVPNSGDGLKRLSY 260
           KLGYSGTAIISRIKP+SV YGLGIPDHDSEGRLVTAEFD+FYLI  YVPNSGDGLKRLSY
Sbjct: 319 KLGYSGTAIISRIKPLSVRYGLGIPDHDSEGRLVTAEFDTFYLICGYVPNSGDGLKRLSY 378

Query: 261 RIGEWDLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTK 320
           R+ EWD SLSNYLKELEKSKPVILTGDLNCAH+EIDIYNPAGN+RSAGFTDEER+SF   
Sbjct: 379 RVTEWDPSLSNYLKELEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAGFTDEERKSFAKN 438

Query: 321 LFVKGICGYFQKTTSKMLXAILTG----------------------VIDMAGAKPIKPDV 358
              +G    F++    ++     G                      + D      I PDV
Sbjct: 439 FLSRGFVDTFRRQHPGVIGYTYWGYRHGGRKFNRGWRLDYFLVSESIADKVHDSYILPDV 498

Query: 359 NGSDHCPIGLILKL 372
            GSDHCPIGL++KL
Sbjct: 499 TGSDHCPIGLVVKL 512


>Glyma10g16370.1 
          Length = 129

 Score =  194 bits (494), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 91/126 (72%), Positives = 105/126 (83%), Gaps = 1/126 (0%)

Query: 88  KVDSEMSTIK-EKDSVKREEVSAEPWTILAHKKPQKGWIPYNPGTMRPPPPAGDTKFVKL 146
           KV S++++I  + + +    +  EPWT+LAHKKPQKGWI YNP TMRPPP A DTKFVKL
Sbjct: 4   KVSSDVASIVVQSEEISTATIQTEPWTVLAHKKPQKGWIAYNPRTMRPPPLAQDTKFVKL 63

Query: 147 MSWNVNGLRALLKSEGFSALELAQRENFDEKDVESIKHCLIDGYDSSFWTCSRSKLGYSG 206
           +SWN NGLRALLK EGFSAL+LAQRE+FDEKD+E IKH LIDGYD+SFWT S SKLGYSG
Sbjct: 64  LSWNANGLRALLKLEGFSALQLAQREDFDEKDIEEIKHHLIDGYDNSFWTFSVSKLGYSG 123

Query: 207 TAIISR 212
           TAIISR
Sbjct: 124 TAIISR 129


>Glyma10g16340.1 
          Length = 201

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 93/120 (77%), Gaps = 11/120 (9%)

Query: 213 IKPISVSYGLGIPDHDSEGRLVTAEFDSFYLISAYVPNSGDGLKRLSYRIGEWDLSLSNY 272
           IKP+SV YGLGI DHDSEGRLVTAEFD+FYLI  Y           SYR+ EWD SLSNY
Sbjct: 62  IKPLSVRYGLGISDHDSEGRLVTAEFDTFYLICGY-----------SYRVTEWDPSLSNY 110

Query: 273 LKELEKSKPVILTGDLNCAHQEIDIYNPAGNRRSAGFTDEERQSFGTKLFVKGICGYFQK 332
           LKELEKSKPVILTGDLNCAH+EIDIYNPAGN+RSAG TDEER+SF T    +G    F++
Sbjct: 111 LKELEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAGLTDEERKSFATNFLSRGFVDTFRR 170


>Glyma02g34660.1 
          Length = 131

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 89/139 (64%), Gaps = 29/139 (20%)

Query: 120 PQKGWIPYNPGTMRPPPPAGDTKFVKLMSWNVNGLRALLKSEGFSALELAQRENFDEKDV 179
           PQKGWI YNP T+R PP A +TKFVKL   NVNGLRALLK EGF A++L+QRE+FD    
Sbjct: 1   PQKGWISYNPRTVRLPPLAQETKFVKLCPGNVNGLRALLKLEGFPAVQLSQREDFD---- 56

Query: 180 ESIKHCLIDGYDSSFWTCSRSKLGYSGTAIISRIKPISVSYGLGIPDHDSEGRLVTAEFD 239
                                        ++ +IK +SV YGLGI DHDSEGRLV+ EFD
Sbjct: 57  -------------------------VFLLVLLQIKLLSVRYGLGISDHDSEGRLVSTEFD 91

Query: 240 SFYLISAYVPNSGDGLKRL 258
           +FYLI  YVPNSGDGLKRL
Sbjct: 92  TFYLICGYVPNSGDGLKRL 110


>Glyma04g36610.2 
          Length = 355

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 23/148 (15%)

Query: 194 FWTCSRSKLGYSGTAIISR--IKPISVSYGLG--IPDHDSEGRLVTAEFDSFYLISAYVP 249
           +W+ + SK  Y+GTA++ +   KP SV + L      H+ +GR++  EF++  L++ YVP
Sbjct: 120 WWSLADSK--YAGTALLVKKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLLNTYVP 177

Query: 250 NSGDGLKRLSY-RIGEWDLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNP-------- 300
           N+G   +  S+ R  +WD  +  ++ +    KP+I  GDLN +H+EID+ +P        
Sbjct: 178 NNGWKEEANSFQRRRKWDKRILEFVTQ-SSDKPLIWCGDLNVSHEEIDVSHPDFFSVAKL 236

Query: 301 ----AGNRRSA---GFTDEERQSFGTKL 321
                 N+      GFT  ER+ FGT L
Sbjct: 237 NGYIPPNKEDCGQPGFTLSERKRFGTIL 264


>Glyma04g36610.1 
          Length = 355

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 23/148 (15%)

Query: 194 FWTCSRSKLGYSGTAIISR--IKPISVSYGLG--IPDHDSEGRLVTAEFDSFYLISAYVP 249
           +W+ + SK  Y+GTA++ +   KP SV + L      H+ +GR++  EF++  L++ YVP
Sbjct: 120 WWSLADSK--YAGTALLVKKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLLNTYVP 177

Query: 250 NSGDGLKRLSY-RIGEWDLSLSNYLKELEKSKPVILTGDLNCAHQEIDIYNP-------- 300
           N+G   +  S+ R  +WD  +  ++ +    KP+I  GDLN +H+EID+ +P        
Sbjct: 178 NNGWKEEANSFQRRRKWDKRILEFVTQ-SSDKPLIWCGDLNVSHEEIDVSHPDFFSVAKL 236

Query: 301 ----AGNRRSA---GFTDEERQSFGTKL 321
                 N+      GFT  ER+ FGT L
Sbjct: 237 NGYIPPNKEDCGQPGFTLSERKRFGTIL 264