Jatropha Genome Database

JcCA0079871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079871.10 - phase: 0 
         (121 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g16320.1                                                       105   9e-24
Glyma02g34640.1                                                        96   6e-21

>Glyma10g16320.1 
          Length = 426

 Score =  105 bits (263), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 62/124 (50%), Positives = 74/124 (59%), Gaps = 4/124 (3%)

Query: 1   MGARKRVXXXXXXXXXXXXXXDK---KADHKPQETNDSPIASPKSGFIFKVSIXXXXXXX 57
           MGARKR+              +    K + KP  T D PIA PK G + K+S+       
Sbjct: 1   MGARKRLSSSEPHSSSPATKENTTTTKPEQKPT-TTDPPIAPPKWGLLLKLSLFFLLPYS 59

Query: 58  XXXXXXXEIHPALQRSILINAALSLAGFFLTVKLIPVASRYVLRRNLFGFDINKKGTPHG 117
                   I P L+RSILINA +SLAG F+TVK+IPVASRYV +RNLFG+DINKKGTP G
Sbjct: 60  YLLFRYYPIEPELRRSILINAGMSLAGLFVTVKMIPVASRYVQKRNLFGYDINKKGTPQG 119

Query: 118 NVKV 121
            VKV
Sbjct: 120 TVKV 123


>Glyma02g34640.1 
          Length = 423

 Score = 96.3 bits (238), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/121 (45%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 1   MGARKRVXXXXXXXXXXXXXXDKKADHKPQETNDSPIASPKSGFIFKVSIXXXXXXXXXX 60
           MGARKR+              +           D PIA PK G +               
Sbjct: 1   MGARKRLSSSEPPSSSPPATNENTNTTAKPTITDPPIAPPKWGLLL-KLSLFLLPYLYLL 59

Query: 61  XXXXEIHPALQRSILINAALSLAGFFLTVKLIPVASRYVLRRNLFGFDINKKGTPHGNVK 120
                I P L+ SILINA +SLAG F+TVK+IPVASRYV +RNLFG+DINKKGTP G VK
Sbjct: 60  FHHYPIEPELRSSILINAGMSLAGLFVTVKMIPVASRYVQKRNLFGYDINKKGTPQGTVK 119

Query: 121 V 121
           V
Sbjct: 120 V 120