Jatropha Genome Database

JcCA0079711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079711.20 - phase: 2 /partial
         (130 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g40710.1                                                       103   4e-23
Glyma19g43390.1                                                       102   1e-22
Glyma11g10340.1                                                        47   4e-06

>Glyma03g40710.1 
          Length = 325

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 22  NKHLQLLNNEEKVKNVMEKVLQEKHSKKNDQKDTEIIRGFLEENGKELGLPPSEANEAVM 81
           +K  +LL NE+++  V++K LQEK   K+    TEIIR FLE N KELGLP ++A+EAV+
Sbjct: 217 SKLRRLLANEQELNTVVKKALQEKREAKDGLGSTEIIRSFLERNAKELGLPLAQADEAVV 276

Query: 82  LLYDAVFAEVECGKCIAE-SEDEFRELVKEILKNFAQQLQANPVYCDL 128
           LLYDAVFAE+   K  AE  ++E  +LVK IL+ FA QL+ +PVY DL
Sbjct: 277 LLYDAVFAEITQEKDGAELDKEELAKLVKNILEKFADQLEVSPVYQDL 324


>Glyma19g43390.1 
          Length = 326

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 2/105 (1%)

Query: 26  QLLNNEEKVKNVMEKVLQEKHSKKND-QKDTEIIRGFLEENGKELGLPPSEANEAVMLLY 84
           QLL NE+++  ++EK L EK   K+    +TEIIR FLE N KELGLPP++A+ AV+LLY
Sbjct: 221 QLLANEQELNTIVEKALLEKPEAKDGLVGNTEIIRSFLERNAKELGLPPAQADNAVVLLY 280

Query: 85  DAVFAEVECGKCIAE-SEDEFRELVKEILKNFAQQLQANPVYCDL 128
           DAVFAE+   K  AE  ++E  +LVK IL+ FA+QL+ NPVY DL
Sbjct: 281 DAVFAEITKEKDGAELDKEELAKLVKNILEKFAEQLEVNPVYQDL 325


>Glyma11g10340.1 
          Length = 376

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%)

Query: 26  QLLNNEEKVKNVMEKVLQEKHSKKNDQKDTEIIRGFLEENGKELGLPPSEANEAVMLLYD 85
           +LL+N+ ++  ++   ++     +N +   E +R  L+      GLPP  A E +  +  
Sbjct: 250 RLLSNKFELDKILNSAMETMPKDRNGKLSKEYLRVALDTVAPSAGLPPVGAIEEMDKVIG 309

Query: 86  AVFAEVECGKCIAESEDEFRELVKEILKNFAQQLQANPVYC 126
            VF  V         EDEF++L+ EIL N   QL+ NP+  
Sbjct: 310 EVFKMVNADDAKVVKEDEFKKLLTEILGNIMLQLEGNPISV 350