Jatropha Genome Database

JcCA0079611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0079611.10 + phase: 0 /partial
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g12960.1                                                       169   1e-42
Glyma01g07110.1                                                       169   1e-42
Glyma02g12960.2                                                       168   2e-42
Glyma02g12960.3                                                       162   1e-40
Glyma20g03090.1                                                       139   6e-34
Glyma02g12960.4                                                       127   4e-30
Glyma07g35220.1                                                        86   2e-17

>Glyma02g12960.1 
          Length = 344

 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 98/126 (77%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           V+LLKSLPLRLYA  L F  ISF T LDWTN+GRLHC LPWW+DATV+FM SGGYN+   
Sbjct: 209 VNLLKSLPLRLYATYLTFTKISFSTSLDWTNVGRLHCFLPWWDDATVDFMTSGGYNVSPL 268

Query: 61  IKQVKKRTLIIYGENDKIVNYKLVVKLHSELGNAIMRQVADSGHLPHVDKPNCVAKLISD 120
           I +VK++TLII+GEND+I++ K  V+LH EL +AI+RQ+ + GHLPH+++P+   KLI +
Sbjct: 269 IGKVKQKTLIIWGENDRIISNKFAVRLHCELPDAIIRQIPNCGHLPHLERPDSTIKLIVE 328

Query: 121 FALHDE 126
           F   + 
Sbjct: 329 FVQRES 334


>Glyma01g07110.1 
          Length = 341

 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 100/129 (77%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           V+LLKSLPLRLYA  L F  ISF T LDWTN+GRLHC LPWW+DATV+FM SGGY++   
Sbjct: 206 VNLLKSLPLRLYATYLTFTKISFSTSLDWTNVGRLHCFLPWWDDATVDFMTSGGYSVAPL 265

Query: 61  IKQVKKRTLIIYGENDKIVNYKLVVKLHSELGNAIMRQVADSGHLPHVDKPNCVAKLISD 120
           I +VK+ TLII+GEND+I++ K  V+LH EL +AI+RQ+   GHLPH+++P+   KLI +
Sbjct: 266 IGKVKQNTLIIWGENDRIISNKFAVRLHCELPDAIIRQIPYCGHLPHLERPDSTIKLIVE 325

Query: 121 FALHDELIR 129
           F   ++LI+
Sbjct: 326 FVQREKLIK 334


>Glyma02g12960.2 
          Length = 271

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 98/126 (77%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           V+LLKSLPLRLYA  L F  ISF T LDWTN+GRLHC LPWW+DATV+FM SGGYN+   
Sbjct: 136 VNLLKSLPLRLYATYLTFTKISFSTSLDWTNVGRLHCFLPWWDDATVDFMTSGGYNVSPL 195

Query: 61  IKQVKKRTLIIYGENDKIVNYKLVVKLHSELGNAIMRQVADSGHLPHVDKPNCVAKLISD 120
           I +VK++TLII+GEND+I++ K  V+LH EL +AI+RQ+ + GHLPH+++P+   KLI +
Sbjct: 196 IGKVKQKTLIIWGENDRIISNKFAVRLHCELPDAIIRQIPNCGHLPHLERPDSTIKLIVE 255

Query: 121 FALHDE 126
           F   + 
Sbjct: 256 FVQRES 261


>Glyma02g12960.3 
          Length = 342

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 97/126 (76%), Gaps = 2/126 (1%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           V+LLKSLPLRLYA  L F  ISF T LDWTN+GRLHC LPWW+DATV+FM SGGYN+   
Sbjct: 209 VNLLKSLPLRLYATYLTFTKISFSTSLDWTNVGRLHCFLPWWDDATVDFMTSGGYNVSPL 268

Query: 61  IKQVKKRTLIIYGENDKIVNYKLVVKLHSELGNAIMRQVADSGHLPHVDKPNCVAKLISD 120
           I +VK++TLII+GEND+I++ K   +LH EL +AI+RQ+ + GHLPH+++P+   KLI +
Sbjct: 269 IGKVKQKTLIIWGENDRIISNKF--RLHCELPDAIIRQIPNCGHLPHLERPDSTIKLIVE 326

Query: 121 FALHDE 126
           F   + 
Sbjct: 327 FVQRES 332


>Glyma20g03090.1 
          Length = 258

 Score =  139 bits (351), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 80/93 (86%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           V +LKS+PLRLYAN L+F +++F T LDWTNIGRLHCLLPWWEDATV+FM SGGYN+ SQ
Sbjct: 164 VYVLKSIPLRLYANYLSFTSLTFSTSLDWTNIGRLHCLLPWWEDATVDFMTSGGYNVASQ 223

Query: 61  IKQVKKRTLIIYGENDKIVNYKLVVKLHSELGN 93
           I++VK++TLII+GEND+I++ KL V LH  L N
Sbjct: 224 IEKVKQKTLIIWGENDRIISNKLAVILHDMLEN 256


>Glyma02g12960.4 
          Length = 302

 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 70/88 (79%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           V+LLKSLPLRLYA  L F  ISF T LDWTN+GRLHC LPWW+DATV+FM SGGYN+   
Sbjct: 209 VNLLKSLPLRLYATYLTFTKISFSTSLDWTNVGRLHCFLPWWDDATVDFMTSGGYNVSPL 268

Query: 61  IKQVKKRTLIIYGENDKIVNYKLVVKLH 88
           I +VK++TLII+GEND+I++ K  V  H
Sbjct: 269 IGKVKQKTLIIWGENDRIISNKFAVVSH 296


>Glyma07g35220.1 
          Length = 228

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 46/63 (73%)

Query: 1   VSLLKSLPLRLYANTLAFNNISFFTILDWTNIGRLHCLLPWWEDATVNFMFSGGYNIISQ 60
           + L K    +L AN L+F   +F T LD TNIGRLHCLLPWWEDATV+FM  GGYN+ SQ
Sbjct: 166 LGLKKPYKFKLIANYLSFTKFTFSTSLDGTNIGRLHCLLPWWEDATVDFMTGGGYNVASQ 225

Query: 61  IKQ 63
           IK+
Sbjct: 226 IKK 228