Jatropha Genome Database

JcCA0078491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0078491.10 - phase: 0 /partial
         (104 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g12930.1                                                        78   2e-15
Glyma04g41870.1                                                        77   4e-15

>Glyma06g12930.1 
          Length = 246

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 49/66 (74%), Gaps = 2/66 (3%)

Query: 39  KMDFNFLQLGCRKNTTLPARKLLIRAARTESQGVFLGFRPPNFELPEPLTGKTWKLDDFE 98
           K+ F+  +L   KN+  P R L +RAAR ES+GV LGFR P F+LPEPLTG TW LDDFE
Sbjct: 31  KLGFHPPRLQLNKNSH-PIR-LFVRAARIESKGVTLGFRTPQFQLPEPLTGTTWTLDDFE 88

Query: 99  SYPALL 104
           +YPALL
Sbjct: 89  AYPALL 94


>Glyma04g41870.1 
          Length = 252

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/66 (60%), Positives = 49/66 (74%), Gaps = 2/66 (3%)

Query: 39  KMDFNFLQLGCRKNTTLPARKLLIRAARTESQGVFLGFRPPNFELPEPLTGKTWKLDDFE 98
           K+ F+  +L   KN+  P R  L+RA RTES+GV LGFR P F+LPEPLTGK W L+DFE
Sbjct: 37  KLAFHPPRLQLNKNSH-PIR-FLVRAGRTESKGVTLGFRAPQFQLPEPLTGKVWTLEDFE 94

Query: 99  SYPALL 104
           +YPALL
Sbjct: 95  AYPALL 100