Jatropha Genome Database

JcCA0077471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.10 - phase: 0 
         (88 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g17550.1                                                       124   2e-29

>Glyma06g17550.1 
          Length = 381

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 1  MKRKREEENRNDMEIVWQTPANPPEKQDYIIRDGRRHVRPYHFEFISHVKNRWAGKTIVD 60
          MKRKRE +   D  IVWQTPANPP   DY+ R+G R+VRPY+FEFI+HVKNRWAGKTIVD
Sbjct: 1  MKRKREGKEGMD-NIVWQTPANPPHPNDYVFRNGIRYVRPYYFEFIAHVKNRWAGKTIVD 59

Query: 61 LFAEEFKGRPYEYYVS 76
          LFAEEFKGRPYEYYVS
Sbjct: 60 LFAEEFKGRPYEYYVS 75