Jatropha Genome Database

JcCA0076141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076141.10 + phase: 2 /pseudo/partial
         (378 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g16810.1                                                       298   6e-81

>Glyma04g16810.1 
          Length = 436

 Score =  298 bits (764), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 142/193 (73%), Positives = 156/193 (80%)

Query: 186 FTEFFCNPVSLTLAPTKWHKFTATLMVVLNTFDAQPLSXXXXXXXXXXXXXXTFNIKYLT 245
             E+F NP S++ AP KW KFT +L VVLNTF+AQPLS               F+IKYLT
Sbjct: 50  LQEYFSNPTSISHAPAKWQKFTLSLSVVLNTFEAQPLSDEEGDANNLEEEAVNFSIKYLT 109

Query: 246 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLTSESMKEEIKTCEERVKKLLE 305
           SSKLMGLELKDPSFRRH+LVQCLILFDYLKAPGK DKDL SE+MKEEI + EERVKKLLE
Sbjct: 110 SSKLMGLELKDPSFRRHVLVQCLILFDYLKAPGKGDKDLPSENMKEEITSWEERVKKLLE 169

Query: 306 MTPPKGKDFLHMVEHILEREKNWVWWKRDGCPAFEKQPIENKMVQDGVKKRKPRWRLGNK 365
           +TPPKG +FLH +EHILEREKNWVWWKRDGC  +EKQ IE K V DG KKR+PRWRLGNK
Sbjct: 170 LTPPKGTEFLHKIEHILEREKNWVWWKRDGCLPYEKQRIEKKAVPDGPKKRRPRWRLGNK 229

Query: 366 ELSQLWKWADQNP 378
           ELSQLWKWADQNP
Sbjct: 230 ELSQLWKWADQNP 242