Jatropha Genome Database

JcCA0076121.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.30 - phase: 2 /pseudo/partial
         (287 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g07990.1                                                       138   8e-33
Glyma13g21770.1                                                       135   4e-32
Glyma09g40400.2                                                       115   6e-26
Glyma09g40400.1                                                       115   6e-26
Glyma18g45450.1                                                        92   5e-19

>Glyma10g07990.1 
          Length = 298

 Score =  138 bits (347), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 90/141 (63%), Gaps = 7/141 (4%)

Query: 147 RELAEGSSRGTMSGANLENVKQVILQPEFCRRTVQISANNSSTNCQFQALIEYLLGMKFS 206
           RE  E + + T SG  LE   +   QP      VQ S      N   Q L EY LGMK S
Sbjct: 165 RESTENTCKETASGKLLEGCTKANDQPGI---DVQESGRR---NWLIQVLFEYALGMKLS 218

Query: 207 TVIQSDDRICISALHQSSGYSFILTWVDKDSAKEPELLYRASTLGTFERVAPEWMRSVLM 266
           T  Q++  IC+SA+HQSSGYSF L+W+ K   +E ELLY   +LGTFERVAPEWMR  +M
Sbjct: 219 TDYQTEG-ICLSAVHQSSGYSFSLSWISKSPDEEAELLYHVLSLGTFERVAPEWMREDIM 277

Query: 267 FSTSMCPIFFERIARVIKMHY 287
           FS SMCPIFFER+ RVIK+++
Sbjct: 278 FSPSMCPIFFERVYRVIKLNH 298


>Glyma13g21770.1 
          Length = 300

 Score =  135 bits (341), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 93/147 (63%), Gaps = 6/147 (4%)

Query: 141 QDDLLVRELAEGSSRGTMSGANLENVKQVILQPEFCRRTVQISANNSSTNCQFQALIEYL 200
           Q + + RE  E   + T SG  LE   +   Q       + +  +    N   Q L EY+
Sbjct: 160 QGNSVERESMENICKDTTSGKLLECCTKANHQS-----GIDLQESGHDGNWLIQVLFEYV 214

Query: 201 LGMKFSTVIQSDDRICISALHQSSGYSFILTWVDKDSAKEPELLYRASTLGTFERVAPEW 260
           LGMK S   Q++ RIC+SALHQSSGYSF ++W+ K   +E ELLY  S+LGTFERVAPEW
Sbjct: 215 LGMKLSIDYQTE-RICLSALHQSSGYSFSISWISKSPEEEAELLYHVSSLGTFERVAPEW 273

Query: 261 MRSVLMFSTSMCPIFFERIARVIKMHY 287
           MR  +MFS SM PIFFER++RVIK+++
Sbjct: 274 MREDIMFSPSMYPIFFERVSRVIKLNH 300


>Glyma09g40400.2 
          Length = 292

 Score =  115 bits (288), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 78/134 (58%), Gaps = 20/134 (14%)

Query: 173 PEFCRRTVQ-------ISANNSST---------NCQFQALIEYLLGMKFSTVIQSDDRIC 216
           P  C+ TV          AN+ S          N   Q L EY L MK S   Q+  RIC
Sbjct: 160 PNACKETVSDNLLECCTKANDRSGIDLHESGHGNWLIQTLFEYALSMKLSLDYQAG-RIC 218

Query: 217 ISALHQSSGYSFILTWVDKDSAKEPELL---YRASTLGTFERVAPEWMRSVLMFSTSMCP 273
           +SALH SSGYSF L+W+ K   +E       Y   +LGTFERVAPEWMR  +MFS SMCP
Sbjct: 219 LSALHGSSGYSFSLSWIGKSPGEEEAEAELLYHVISLGTFERVAPEWMREDIMFSPSMCP 278

Query: 274 IFFERIARVIKMHY 287
           IFFERI+RVIK+++
Sbjct: 279 IFFERISRVIKLNH 292


>Glyma09g40400.1 
          Length = 301

 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 69/101 (68%), Gaps = 4/101 (3%)

Query: 190 NCQFQALIEYLLGMKFSTVIQSDDRICISALHQSSGYSFILTWVDKDSAKEPELL---YR 246
           N   Q L EY L MK S   Q+  RIC+SALH SSGYSF L+W+ K   +E       Y 
Sbjct: 202 NWLIQTLFEYALSMKLSLDYQAG-RICLSALHGSSGYSFSLSWIGKSPGEEEAEAELLYH 260

Query: 247 ASTLGTFERVAPEWMRSVLMFSTSMCPIFFERIARVIKMHY 287
             +LGTFERVAPEWMR  +MFS SMCPIFFERI+RVIK+++
Sbjct: 261 VISLGTFERVAPEWMREDIMFSPSMCPIFFERISRVIKLNH 301


>Glyma18g45450.1 
          Length = 65

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)

Query: 225 GYSFILTWVDKDSAKE-PELLYRASTLGTFERVAPEWMRSVLMFSTSMCPIFFERIARVI 283
           GYSF L+W+ K   +E  ELLY   +LGTFERVAPEWM+  +MFS SMCPIFFERI+RVI
Sbjct: 1   GYSFSLSWIGKSPGEEEAELLYHVISLGTFERVAPEWMKEDIMFSPSMCPIFFERISRVI 60

Query: 284 KMHY 287
           K+++
Sbjct: 61  KLNH 64