Jatropha Genome Database

JcCA0076121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01830.1                                                       105   1e-23
Glyma01g43640.1                                                       105   1e-23
Glyma11g01830.2                                                       105   2e-23

>Glyma11g01830.1 
          Length = 412

 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 56/70 (80%)

Query: 76  LYEARANTGIDRMKIINSVAKSVPGPHKVDLSNPXXXXXXXXXXXXCLIGVVEKYKELAK 135
           LYEARANTG+DRM+II++VAKSVPGPHKVDL NP            CLIGV+EKYKEL+K
Sbjct: 342 LYEARANTGVDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVEIARTVCLIGVIEKYKELSK 401

Query: 136 YNMRQLTSPK 145
           YN+RQLTS K
Sbjct: 402 YNLRQLTSRK 411


>Glyma01g43640.1 
          Length = 384

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 56/70 (80%)

Query: 76  LYEARANTGIDRMKIINSVAKSVPGPHKVDLSNPXXXXXXXXXXXXCLIGVVEKYKELAK 135
           LYEARANTG+DRM+II++VAKSVPGPHKVDL NP            CLIGV+EKYKEL+K
Sbjct: 314 LYEARANTGVDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVEIARTVCLIGVIEKYKELSK 373

Query: 136 YNMRQLTSPK 145
           YN+RQLTS K
Sbjct: 374 YNLRQLTSRK 383


>Glyma11g01830.2 
          Length = 377

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 55/68 (80%)

Query: 76  LYEARANTGIDRMKIINSVAKSVPGPHKVDLSNPXXXXXXXXXXXXCLIGVVEKYKELAK 135
           LYEARANTG+DRM+II++VAKSVPGPHKVDL NP            CLIGV+EKYKEL+K
Sbjct: 307 LYEARANTGVDRMEIIDAVAKSVPGPHKVDLKNPDKTIVVEIARTVCLIGVIEKYKELSK 366

Query: 136 YNMRQLTS 143
           YN+RQLTS
Sbjct: 367 YNLRQLTS 374