Jatropha Genome Database

JcCA0076041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076041.10 - phase: 0 /partial
         (78 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g11950.1                                                        89   1e-18

>Glyma20g11950.1 
          Length = 376

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 53/78 (67%)

Query: 1   MDVXXXXXXXXXXXXXXINLDNIEIESLYPDEMGPHAMSVEKFLGSGIALLDNNIQERVK 60
           MDV              INLD+I+IESLYP EMGP  M+VE FL  G+ LLD +IQ+RV+
Sbjct: 234 MDVARKALILARILGHQINLDSIQIESLYPKEMGPGVMTVEDFLNRGLLLLDKDIQDRVE 293

Query: 61  KASLNQNVLRYVCVIEGS 78
           KA+ N NVLRYVCVI GS
Sbjct: 294 KAASNGNVLRYVCVIMGS 311