Jatropha Genome Database

JcCA0075411.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.40 - phase: 2 /partial
         (59 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g10710.1                                                        88   2e-18
Glyma05g01180.1                                                        88   2e-18
Glyma06g20540.1                                                        86   1e-17
Glyma04g33900.1                                                        86   1e-17
Glyma04g33900.2                                                        63   6e-11

>Glyma17g10710.1 
          Length = 197

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/43 (97%), Positives = 42/43 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQR 43
           VGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKRKNQR
Sbjct: 138 VGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQR 180


>Glyma05g01180.1 
          Length = 197

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/43 (97%), Positives = 42/43 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQR 43
           VGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKRKNQR
Sbjct: 138 VGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQR 180


>Glyma06g20540.1 
          Length = 197

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQR 43
           VGRQVVNIPSF+VRVDSQKHIDFSLTSP GGGRPGRVKR+NQR
Sbjct: 138 VGRQVVNIPSFLVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQR 180


>Glyma04g33900.1 
          Length = 197

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/43 (93%), Positives = 42/43 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQR 43
           VGRQVVNIPSF+VRVDSQKHIDFSLTSP GGGRPGRVKR+NQR
Sbjct: 138 VGRQVVNIPSFLVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQR 180


>Glyma04g33900.2 
          Length = 183

 Score = 63.2 bits (152), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/31 (90%), Positives = 30/31 (96%)

Query: 13  VRVDSQKHIDFSLTSPFGGGRPGRVKRKNQR 43
           +RVDSQKHIDFSLTSP GGGRPGRVKR+NQR
Sbjct: 136 IRVDSQKHIDFSLTSPLGGGRPGRVKRRNQR 166