Jatropha Genome Database

JcCA0072641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0072641.10 + phase: 0 /partial
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g07170.1                                                        89   9e-19
Glyma07g30140.1                                                        87   6e-18
Glyma06g10290.1                                                        62   2e-10
Glyma04g10340.1                                                        59   9e-10

>Glyma08g07170.1 
          Length = 358

 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 8/123 (6%)

Query: 7   GTLRDLTKGGKQISFDQNEM---GNIKPSTLERENPYANRDXXXXXXXXXXXXLDSDNSV 63
           GTLRDL+K G+ I+F+QNE+    +IKPST E ++ YA +             +DS  S 
Sbjct: 231 GTLRDLSKAGR-IAFEQNELDTSADIKPSTTEAKHSYAKQGKEGSPEETKPVQMDSRRSP 289

Query: 64  -RPNEQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFDDQV 122
            + NEQ ++ T E+ TN   + LEN ++ +++   QDTL+DL + S +EFEIP  FDDQV
Sbjct: 290 EKTNEQFIIGTAESVTNNLSVRLENHALILHE---QDTLEDLADASGTEFEIPAGFDDQV 346

Query: 123 DID 125
           DID
Sbjct: 347 DID 349


>Glyma07g30140.1 
          Length = 355

 Score = 86.7 bits (213), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 78/123 (63%), Gaps = 8/123 (6%)

Query: 7   GTLRDLTKGGKQISFDQNEM---GNIKPSTLERENPYANRDXXXXXXXXXXXXLDSDNSV 63
           GTLRDL+K  + I+F+QNE+    +IKPST E E+ +A +D            +DS  S 
Sbjct: 228 GTLRDLSKAAR-IAFEQNELDTSADIKPSTTEAEHSFAKQDKEGSPEETKPVQMDSSRSP 286

Query: 64  -RPNEQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFDDQV 122
            + N+Q ++ T E+ T+   + +EN ++++++   QDTL+DL + S +EFEIP  FDDQV
Sbjct: 287 EKTNDQFIIGTAESVTDNLSIQVENHALSLHE---QDTLEDLADASGTEFEIPAGFDDQV 343

Query: 123 DID 125
           DID
Sbjct: 344 DID 346


>Glyma06g10290.1 
          Length = 351

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 71/119 (59%), Gaps = 9/119 (7%)

Query: 7   GTLRDLTKGGKQISFDQNEMG---NIKP-STLERENP--YANRDXXXXXXXXXXXXLDSD 60
           GTLRDL+KGG+ +S +Q+++    ++KP S LE E P  +  +D              S+
Sbjct: 236 GTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHDEQDSSEDPSKSNAADGSSN 295

Query: 61  NSVRPNEQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFD 119
           ++V P+++EL ET E  TN  P+ + +SS N N+   Q+ L +L N S ++ +IPGNFD
Sbjct: 296 HAVNPSDEELPETAEHFTNVLPLGIGHSSTNENE---QEPLVELSNPSDTDIDIPGNFD 351


>Glyma04g10340.1 
          Length = 350

 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 9/119 (7%)

Query: 7   GTLRDLTKGGKQISFDQNEMG---NIKP-STLERENPYANRDXXXXXXXXXXXXLD--SD 60
           GTLRDL+KGG+ +S +Q+++    ++KP S LE E P  + +             D  S+
Sbjct: 235 GTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHDEQGSSEDPSKSNAADGSSN 294

Query: 61  NSVRPNEQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFD 119
           ++V P+++EL ET E  TN  P+ + +SS N ++   Q+ L +L N S ++ +IPGNFD
Sbjct: 295 HAVNPSDEELPETAEHFTNVLPLGIGHSSTNDSE---QEPLVELSNPSDTDIDIPGNFD 350