Jatropha Genome Database

JcCA0071111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071111.10 - phase: 0 /partial/short
         (46 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g40570.1                                                        59   1e-09
Glyma17g37540.1                                                        59   1e-09
Glyma20g34160.1                                                        51   2e-07

>Glyma14g40570.1 
          Length = 500

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPLHF---FPGAFGIFKREFG 46
           M MT KILARA+EK QL PG+N W NVD  +      PG+ GIFKREFG
Sbjct: 59  MTMTEKILARASEKAQLTPGDNVWVNVDILMTHDVCGPGSIGIFKREFG 107


>Glyma17g37540.1 
          Length = 502

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPLHF---FPGAFGIFKREFG 46
           M MT KILARA+EK QL PG+N W NVD  +      PG+ GIFKREFG
Sbjct: 60  MTMTEKILARASEKVQLTPGDNVWVNVDILMTHDVCGPGSIGIFKREFG 108


>Glyma20g34160.1 
          Length = 535

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPL---HFFPGAFGIFKREFG 46
           M  T KILARAAEK ++ PGEN W NVD  +      PG  GIFK+EFG
Sbjct: 71  MTATEKILARAAEKCEVRPGENAWANVDVLMINDITCPGISGIFKKEFG 119