Jatropha Genome Database

JcCA0070381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0070381.10 - phase: 0 /pseudo/partial
         (146 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g02200.1                                                        57   8e-09

>Glyma04g02200.1 
          Length = 372

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 5  WSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPR 42
          W ELPPELL +I++    YVDYL  R+VC+SWRS++P+
Sbjct: 5  WGELPPELLESISKTLTIYVDYLRFRSVCRSWRSSVPK 42