Jatropha Genome Database

JcCA0064141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0064141.10 - phase: 0 /pseudo/partial
         (261 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g29140.1                                                       317   9e-87
Glyma08g20080.1                                                       317   1e-86

>Glyma12g29140.1 
          Length = 500

 Score =  317 bits (812), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 166/249 (66%), Positives = 200/249 (80%), Gaps = 5/249 (2%)

Query: 18  KIPHVLTVAGSDSGAGAGIQADLKTCAARGVFCSTVITAVTAQNTVGVQGVNIVPEDFVA 77
           KIPHVL+VAGSDSG GAGIQADLKTC AR V+CSTVITAVTAQNT GVQG+NI+PEDFVA
Sbjct: 13  KIPHVLSVAGSDSGGGAGIQADLKTCGARRVYCSTVITAVTAQNTAGVQGLNILPEDFVA 72

Query: 78  EQLKSVLSDMQVDVVKTGMLPSIGIVNILRQSLREFPVRG-----SFGG*SCHGIYKWRC 132
           +QL SVLSDM V VVKTGMLPS+ IV +L Q+LR+FP++           S   +     
Sbjct: 73  DQLHSVLSDMHVHVVKTGMLPSLNIVKVLSQTLRKFPIKALVVDPVMISTSGDVLVGPSV 132

Query: 133 ASWSFHSFLFSADIITPNIKEASALLGGTPLKTVADMRSAAKLLHAIGPRNVLVKGGDLP 192
            +      L   DI+TPNIKEAS LLGG PLK+V+DMR+AAKL+H +GPRNVLVKGGDLP
Sbjct: 133 LAGFLEELLPMTDIVTPNIKEASVLLGGVPLKSVSDMRTAAKLIHDLGPRNVLVKGGDLP 192

Query: 193 DSLDAVDIFFDGKNYHELRASRIKTRNTHGTGCTLASCIAAELAKGSPMLSAVKIAKRYV 252
           +SLDA+D+FFDG++++EL + R+ TRN+HGTGCTLASCIAAELAKGS MLSAVK AK ++
Sbjct: 193 NSLDAIDVFFDGEDFYELCSPRVNTRNSHGTGCTLASCIAAELAKGSSMLSAVKTAKHFI 252

Query: 253 ETALEYSKD 261
           + AL+YS+D
Sbjct: 253 QAALDYSRD 261


>Glyma08g20080.1 
          Length = 541

 Score =  317 bits (811), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/254 (66%), Positives = 201/254 (79%), Gaps = 5/254 (1%)

Query: 13  DASKAKIPHVLTVAGSDSGAGAGIQADLKTCAARGVFCSTVITAVTAQNTVGVQGVNIVP 72
           D +   IPHVL+VAGSDSG GAGIQADLKTCAAR V+CSTVITAVTAQNT GVQG+NI+P
Sbjct: 49  DMNMNSIPHVLSVAGSDSGGGAGIQADLKTCAARRVYCSTVITAVTAQNTAGVQGLNILP 108

Query: 73  EDFVAEQLKSVLSDMQVDVVKTGMLPSIGIVNILRQSLREFPVRG-----SFGG*SCHGI 127
           EDFVA+QL SVLSDM V VVKTGMLPS+ IV +L Q+LR+FP++           S   +
Sbjct: 109 EDFVADQLHSVLSDMHVHVVKTGMLPSLNIVKVLCQTLRKFPIKALVVDPVMISTSGDVL 168

Query: 128 YKWRCASWSFHSFLFSADIITPNIKEASALLGGTPLKTVADMRSAAKLLHAIGPRNVLVK 187
                 +      L   DI+TPNIKEAS LLGG PLK+V+DMR+AAKL+H +GPRNVLVK
Sbjct: 169 VGPSVLAGFLEELLPMTDIVTPNIKEASVLLGGVPLKSVSDMRTAAKLIHDLGPRNVLVK 228

Query: 188 GGDLPDSLDAVDIFFDGKNYHELRASRIKTRNTHGTGCTLASCIAAELAKGSPMLSAVKI 247
           GGDLP+SLDA+D+FFDG+ ++EL + R+ TRN+HGTGCTLASCIAAELAKGS MLSAVK 
Sbjct: 229 GGDLPNSLDAIDVFFDGEEFYELCSPRVNTRNSHGTGCTLASCIAAELAKGSSMLSAVKT 288

Query: 248 AKRYVETALEYSKD 261
           AK ++E AL+YS+D
Sbjct: 289 AKHFIEAALDYSRD 302