Jatropha Genome Database

JcCA0059791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059791.20 + phase: 0 
         (99 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g16630.2                                                       123   5e-29
Glyma07g16630.1                                                       122   6e-29

>Glyma07g16630.2 
          Length = 162

 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 65/96 (67%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDWG VTAEDL+ ALREVDWS+PPRPL EFFSRFT+PRS  KWNSR KCNLYYYRTNYFI
Sbjct: 1  MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSSKWNSRLKCNLYYYRTNYFI 60

Query: 61 VIVLALGVACXXXXXXXXXXXXXXXXXXFLNDRYAN 96
          +IV  L +                    FLND +A 
Sbjct: 61 LIVSVLILGFLRRPLAIVAALLTALNIAFLNDSFAG 96


>Glyma07g16630.1 
          Length = 209

 Score =  122 bits (307), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 65/96 (67%)

Query: 1  MDWGTVTAEDLMGALREVDWSTPPRPLHEFFSRFTIPRSYPKWNSRFKCNLYYYRTNYFI 60
          MDWG VTAEDL+ ALREVDWS+PPRPL EFFSRFT+PRS  KWNSR KCNLYYYRTNYFI
Sbjct: 1  MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSSKWNSRLKCNLYYYRTNYFI 60

Query: 61 VIVLALGVACXXXXXXXXXXXXXXXXXXFLNDRYAN 96
          +IV  L +                    FLND +A 
Sbjct: 61 LIVSVLILGFLRRPLAIVAALLTALNIAFLNDSFAG 96