Jatropha Genome Database

JcCA0059711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059711.10 - phase: 0 
         (66 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g39220.1                                                        49   9e-07
Glyma11g06050.1                                                        49   1e-06
Glyma05g16070.1                                                        47   3e-06

>Glyma01g39220.1 
          Length = 198

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 10  SGRKCFQSEKMPTQXXXXXXXXXXXXXXXXXXXXXYNYDVAKDVPLEGRYQWVRLKP 66
           S R   +++ MPT+                     YNYD+ KDVPLEGRY+WV+LKP
Sbjct: 142 SHRALSKAKAMPTELELEEFFVAAEKDIQKRFQDKYNYDIVKDVPLEGRYEWVQLKP 198


>Glyma11g06050.1 
          Length = 205

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/22 (81%), Positives = 21/22 (95%)

Query: 45  YNYDVAKDVPLEGRYQWVRLKP 66
           YNYD+ KDVPLEGRY+WV+LKP
Sbjct: 184 YNYDIVKDVPLEGRYEWVQLKP 205


>Glyma05g16070.1 
          Length = 184

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 18  EKMPTQXXXXXXXXXXXXXXXXXXXXXYNYDVAKDVPLEGRYQWVRLKP 66
           +KMPT+                     YNYD+ KDV LEGRY+WV+LKP
Sbjct: 136 QKMPTELELDEFFAAAEKDIRKRFSDKYNYDIVKDVSLEGRYEWVKLKP 184