Jatropha Genome Database

JcCA0046261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046261.10 - phase: 0 
         (77 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g18480.1                                                        92   1e-19
Glyma08g36090.1                                                        84   4e-17
Glyma06g16810.1                                                        82   2e-16
Glyma08g00800.1                                                        81   3e-16
Glyma06g16800.1                                                        69   2e-12
Glyma05g33200.1                                                        64   3e-11

>Glyma16g18480.1 
          Length = 96

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 54/71 (76%), Gaps = 2/71 (2%)

Query: 9  SAVXXXXXXXVATEI--GSKMAEARTCESQSHKFKGTCLSETNCANVCKTEGFTGGDCRG 66
          S +       VATE+   + +AEARTCESQSH+FKG CLS+TNC +VC+TE FTGG CRG
Sbjct: 26 STIFVLLLLLVATEMMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTERFTGGHCRG 85

Query: 67 LRRRCFCTRHC 77
           RRRCFCT+HC
Sbjct: 86 FRRRCFCTKHC 96


>Glyma08g36090.1 
          Length = 62

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 45/51 (88%)

Query: 27 MAEARTCESQSHKFKGTCLSETNCANVCKTEGFTGGDCRGLRRRCFCTRHC 77
          +AEARTCESQSH+FKG CLS+TNC +VC+TEGF+GG CRG  RRCFCT+ C
Sbjct: 6  VAEARTCESQSHRFKGPCLSDTNCGSVCRTEGFSGGHCRGFSRRCFCTKEC 56


>Glyma06g16810.1 
          Length = 73

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 41/49 (83%)

Query: 29 EARTCESQSHKFKGTCLSETNCANVCKTEGFTGGDCRGLRRRCFCTRHC 77
          E R CES+SH+FKG CLS+ NCA+VC  EGFTGG CRG RRRCFCTRHC
Sbjct: 25 EGRHCESKSHRFKGMCLSKHNCASVCHLEGFTGGKCRGFRRRCFCTRHC 73


>Glyma08g00800.1 
          Length = 55

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 43/55 (78%)

Query: 23 IGSKMAEARTCESQSHKFKGTCLSETNCANVCKTEGFTGGDCRGLRRRCFCTRHC 77
          +  K AE R C S+SH FKG C S+TNCA+VC+TEGFTGGDC G RRRCFCTR C
Sbjct: 1  VAVKRAEGRDCSSKSHGFKGLCFSDTNCAHVCRTEGFTGGDCGGFRRRCFCTRIC 55


>Glyma06g16800.1 
          Length = 75

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 36/49 (73%)

Query: 29 EARTCESQSHKFKGTCLSETNCANVCKTEGFTGGDCRGLRRRCFCTRHC 77
          E R CESQSH F G C  + NCA VC+ EGF+GG C+G RRRCFCTR C
Sbjct: 27 EGRVCESQSHGFHGLCNRDHNCALVCRNEGFSGGRCKGFRRRCFCTRIC 75


>Glyma05g33200.1 
          Length = 74

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 20 ATEIGSKMAEARTCESQSHKFKGTCLSETNCANVCKTEGFTGGDCRGLRRRCFCTRHC 77
          A+++  K AEA+ C ++ H F+G CL +  CA+VC+++GF GG CRG  R+CFC+R C
Sbjct: 17 ASDVTVKRAEAKDCLTRRHGFQGRCLFDRQCAHVCRSDGFIGGQCRGPLRKCFCSRPC 74