Jatropha Genome Database

JcCA0046021.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046021.30 - phase: 0 /partial
         (59 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g16590.1                                                        74   3e-14
Glyma02g16590.3                                                        74   3e-14
Glyma10g03240.1                                                        74   3e-14
Glyma10g03240.2                                                        74   4e-14
Glyma02g16590.2                                                        68   2e-12

>Glyma02g16590.1 
          Length = 261

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 40/55 (72%)

Query: 1   VALRNIRRDXXXXXXXXXXXXXXSEDNVKDLSSDFQKLTDEYMKKIDTIYKQKEK 55
           VALRNIRRD              SEDNVKDLSSD QKLTDEYMKK+DTI+KQKEK
Sbjct: 202 VALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEK 256


>Glyma02g16590.3 
          Length = 247

 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 40/55 (72%)

Query: 1   VALRNIRRDXXXXXXXXXXXXXXSEDNVKDLSSDFQKLTDEYMKKIDTIYKQKEK 55
           VALRNIRRD              SEDNVKDLSSD QKLTDEYMKK+DTI+KQKEK
Sbjct: 188 VALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEK 242


>Glyma10g03240.1 
          Length = 204

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 41/56 (73%)

Query: 1   VALRNIRRDXXXXXXXXXXXXXXSEDNVKDLSSDFQKLTDEYMKKIDTIYKQKEKV 56
           VALRNIRRD              SEDNVKDLSSD QKLTDEYMKK+DTI+KQKEK+
Sbjct: 114 VALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEKL 169


>Glyma10g03240.2 
          Length = 173

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/55 (69%), Positives = 40/55 (72%)

Query: 1   VALRNIRRDXXXXXXXXXXXXXXSEDNVKDLSSDFQKLTDEYMKKIDTIYKQKEK 55
           VALRNIRRD              SEDNVKDLSSD QKLTDEYMKK+DTI+KQKEK
Sbjct: 114 VALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQKLTDEYMKKVDTIFKQKEK 168


>Glyma02g16590.2 
          Length = 260

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 39/55 (70%), Gaps = 1/55 (1%)

Query: 1   VALRNIRRDXXXXXXXXXXXXXXSEDNVKDLSSDFQKLTDEYMKKIDTIYKQKEK 55
           VALRNIRRD              SEDNVKDLSSD Q LTDEYMKK+DTI+KQKEK
Sbjct: 202 VALRNIRRDALKAYDKLEKEKKLSEDNVKDLSSDLQ-LTDEYMKKVDTIFKQKEK 255