Jatropha Genome Database

JcCA0046021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046021.20 + phase: 0 
         (255 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g33940.1                                                       270   8e-73
Glyma03g31100.1                                                       168   4e-42
Glyma14g11150.1                                                       104   9e-23
Glyma17g34430.1                                                        85   9e-17

>Glyma19g33940.1 
          Length = 275

 Score =  270 bits (691), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 155/286 (54%), Positives = 181/286 (63%), Gaps = 51/286 (17%)

Query: 4   LRFPFLFSQPIRPSVISYATTSRSXXXXXXXXXXXXXXXXXXXXXXXIQNPTNTRDSFLQ 63
           LRFPF F QP RP      T   +                           +++  SFL+
Sbjct: 5   LRFPFSFPQPRRPQFPRPFTAFAAAVAGASAAV---------------VAVSSSDRSFLR 49

Query: 64  TALNFLLPNHSSLP-WGSLSLADASPALVESKTG-------------------------- 96
            ALN    +  S+P WGSLSLAD+  ++VESKTG                          
Sbjct: 50  NALNSFFSSDLSMPLWGSLSLADSGVSVVESKTGTSFPSVLDSSQKLCGIGLRKKSILGL 109

Query: 97  ---------VYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSR 147
                    VYADD+ +K  L EKYGKLS SEL+ +KEF EDLME DI +T+RLQIVY R
Sbjct: 110 KNIDVYAFGVYADDEDIKRHLSEKYGKLSASELQGSKEFTEDLMESDISMTIRLQIVYGR 169

Query: 148 LSIRSVRSAFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLR 207
           LSIRSVRSAFEESVGSRLQKFGG DNKELLQ FTSQFKDE+KIPRGSVI LSR+KGHVLR
Sbjct: 170 LSIRSVRSAFEESVGSRLQKFGGSDNKELLQSFTSQFKDEFKIPRGSVIHLSRDKGHVLR 229

Query: 208 TTIDGKEAGSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLL 253
           T+IDG+E GS+QSK+LC+SILDLY GE+PFD+QAKE IE  +AS L
Sbjct: 230 TSIDGQEVGSIQSKLLCKSILDLYFGEEPFDKQAKEEIELNMASYL 275


>Glyma03g31100.1 
          Length = 292

 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/319 (38%), Positives = 156/319 (48%), Gaps = 100/319 (31%)

Query: 4   LRFPFLFSQPIRPSVISYATTSRSXXXXXXXXXXXXXXXXXXXXXXXIQNPTNTRDSFLQ 63
           LRFPF F QP RP      T   +                           +++  SFL+
Sbjct: 5   LRFPFSFLQPQRPQFPRPFTAFAAAAAV-----------------------SSSDRSFLR 41

Query: 64  TALNFLLPNHSSLPW-GSLSLADASPALVESKTG-------------------------- 96
            ALN     + S+P  GSLSLAD+   +VE+KTG                          
Sbjct: 42  NALNSFFSVNPSMPLLGSLSLADSGVCVVEAKTGTSFPSILDSSQKLCGIGLRKKNVLGL 101

Query: 97  ---------VYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDI-FITVRLQIVYS 146
                    VYA D+ +K  L EKYGKLS SEL+ NKEF EDLME++  F++ +      
Sbjct: 102 KNIDVYAFGVYATDEDIKRHLSEKYGKLSASELQGNKEFTEDLMEIEHSFLSCK------ 155

Query: 147 RLSIRSVRSAFEESVGSRLQKFG------------------GPDNKELLQR--------- 179
            L  R++R+ F+    S L  F                   G      L+R         
Sbjct: 156 SLGDRTIRNCFK--AFSFLFPFSYLALMHYLVQRKEGILMEGKGTLFGLKRERRKNKAIT 213

Query: 180 -----FTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKEAGSVQSKVLCRSILDLYIGE 234
                FTSQFKDE+KIPRGSVI LSR+KGHVLRT+IDG+E GS+QSK+LC+SILDLY GE
Sbjct: 214 IIPILFTSQFKDEFKIPRGSVIHLSRDKGHVLRTSIDGQEVGSIQSKLLCKSILDLYFGE 273

Query: 235 DPFDRQAKENIESKLASLL 253
           +PFD QAKE IE  +AS L
Sbjct: 274 EPFDNQAKEEIELNMASYL 292


>Glyma14g11150.1 
          Length = 175

 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 85/159 (53%)

Query: 96  GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSRLSIRSVRS 155
           GVY     +   LG KY  +S  EL  + +F +DL+  DI +TVRL      + I SV+ 
Sbjct: 15  GVYVHPYSLCEKLGPKYASISADELNNHHDFYKDLLREDINMTVRLVANCRGMKINSVKD 74

Query: 156 AFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKEA 215
           AFE+S+ +RL K     +   L+ F S F +   IP G+VIE  R     L T I G + 
Sbjct: 75  AFEKSLRARLVKANPSTDFSCLKTFGSYFTENISIPLGTVIEFKRTVDGRLITKISGNQI 134

Query: 216 GSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLLQ 254
           GSV SK LCR+  D+YIG+ P   Q K+ I    A+++ 
Sbjct: 135 GSVHSKDLCRAFFDMYIGDVPVCEQTKKEIGMNAANIIN 173


>Glyma17g34430.1 
          Length = 202

 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 69/129 (53%)

Query: 96  GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSRLSIRSVRS 155
           GVY     +   LG KY  +S  EL  + +F +DL+  DI +TVRL +    + I SV+ 
Sbjct: 73  GVYVHPYSLCEKLGPKYASISADELNNHHDFYKDLLREDINMTVRLVVNCRGMKINSVKD 132

Query: 156 AFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKEA 215
           AFE+S+ +RL K     +   L+ F S F + + IP G++IE  R     L T I G + 
Sbjct: 133 AFEKSLRARLVKTNPSTDFSCLKTFGSYFTENFSIPLGTIIEFKRTVDGRLITKISGNQI 192

Query: 216 GSVQSKVLC 224
           GSV  K LC
Sbjct: 193 GSVHCKDLC 201