Jatropha Genome Database

JcCA0045831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.20 + phase: 1 /TE/partial
         (63 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g29590.1                                                        52   1e-07
Glyma15g09420.1                                                        49   2e-06

>Glyma13g29590.1 
          Length = 547

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 2   SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQID 55
           +CGG+ R+S G +L G  +N+G  +   AE WGV  GL LAW  G +  ++ ID
Sbjct: 402 ACGGLVRDSSGCYLGGFTVNLGNTSVTLAELWGVVHGLKLAWDLGCKKVKVDID 455


>Glyma15g09420.1 
          Length = 825

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 2   SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTEL 52
           +CGG+ R+S G +L G  +N+G      AE WGV  GL LAW  G +  +L
Sbjct: 700 ACGGLVRDSSGCFLGGFTVNLGITAVTLAELWGVVHGLKLAWDLGCKKVKL 750