Jatropha Genome Database

JcCA0045271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.10 + phase: 2 /partial
         (205 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g02290.1                                                       181   5e-46
Glyma04g02230.1                                                       178   3e-45
Glyma03g33830.1                                                        48   6e-06
Glyma03g33830.2                                                        48   7e-06

>Glyma06g02290.1 
          Length = 434

 Score =  181 bits (459), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 130/214 (60%), Gaps = 10/214 (4%)

Query: 1   FHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGGFRANPLFDEIVKTVNDS 60
           FH+GS  +D + Y  AI+ A+  F+ A  L +P MR+L+IGGGF + P F+     +N +
Sbjct: 218 FHIGSGGADTRAYDGAISAAKNVFEMASGLGLPRMRVLDIGGGFTSGPPFEAAALKINAA 277

Query: 61  IQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHGSFKLAAN 120
           IQ  F N+   L VI EPGRYFAET F L T +IGKR+RG+  +YWIDDGI+G+      
Sbjct: 278 IQASFGNE-EGLVVIGEPGRYFAETAFTLATRIIGKRVRGDVREYWIDDGIYGTLNNIVF 336

Query: 121 DPASLMYKVLLQNEDGAGPITS---------STIFGPTCDSLDVVISGCELSELQVNDLI 171
           D A++    L        P  S         ST+FGPTCDS+D V+   +L  LQVND +
Sbjct: 337 DYATVTCMPLACTSKPENPRCSRELNLKTYPSTVFGPTCDSIDTVLRDYKLPGLQVNDWL 396

Query: 172 VFYNMGAYTTSFASKFNGFNRFDLPTYLAFTNAD 205
           VF NMGAYTTS  + FNGF+     T+LA+++ +
Sbjct: 397 VFPNMGAYTTSSGTNFNGFSSSAKSTFLAYSSPE 430


>Glyma04g02230.1 
          Length = 459

 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 129/214 (60%), Gaps = 10/214 (4%)

Query: 1   FHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGGFRANPLFDEIVKTVNDS 60
           FH+GS  +D + YH AI+ A+  F++A +L +P M +L+IGGGF + P F+     +N +
Sbjct: 243 FHIGSGGADTRAYHGAISAAKNVFESASRLGLPRMGVLDIGGGFTSGPSFEAAALKINAA 302

Query: 61  IQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHGSFKLAAN 120
           I+  F  +   L VI EPGRYFAET F L T VIGKR+RG+  +YWIDDGI+G+      
Sbjct: 303 IEGSFGKE-EGLVVIGEPGRYFAETAFTLATRVIGKRVRGDVREYWIDDGIYGTLNNIVF 361

Query: 121 DPASLMYKVLLQNEDGAGPITS---------STIFGPTCDSLDVVISGCELSELQVNDLI 171
           D A++    L        P            ST+FGPTCDS+D V+   +L ELQVND +
Sbjct: 362 DYATVTCMPLACTSKPENPTCCRDLNLKTYPSTVFGPTCDSIDTVLRDYQLPELQVNDWL 421

Query: 172 VFYNMGAYTTSFASKFNGFNRFDLPTYLAFTNAD 205
           VF NMGAYTTS  + FNGF+      +LA ++ +
Sbjct: 422 VFPNMGAYTTSSGTNFNGFSSSAKSIFLACSSPE 455


>Glyma03g33830.1 
          Length = 488

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 2   HVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGGFRAN--------PLFDEI 53
           H+GS  +   ++  A AT    +   I+ +   +  LNIGGG   +        P   ++
Sbjct: 268 HLGSTITKVDIFRDA-ATIMINYIDQIRDQGFEVDYLNIGGGLGIDYYHSGAILPTPRDL 326

Query: 54  VKTVNDSIQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHG 113
           + TV D +          L +I EPGR        LV  V G +  G +    ID  +  
Sbjct: 327 IDTVRDLVIS------RGLNLIIEPGRSLIANTCCLVNRVTGVKSNGSKNFIVIDGSMAE 380

Query: 114 SFKLAANDPASLMYKVLLQNEDGAGPITSSTIFGPTCDSLDVVISGCELSELQVNDLIVF 173
             + +  D  +  +  L+         T+  + GP C+S D +  G EL        +V 
Sbjct: 381 LIRPSLYD--AYQHIELVSPAPSNAETTTFDVVGPVCESADFLGKGRELPTPAKGTGLVV 438

Query: 174 YNMGAYTTSFASKFN 188
           ++ GAY  S AS +N
Sbjct: 439 HDAGAYCMSMASTYN 453


>Glyma03g33830.2 
          Length = 463

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 17/195 (8%)

Query: 2   HVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGGFRAN--------PLFDEI 53
           H+GS  +   ++  A AT    +   I+ +   +  LNIGGG   +        P   ++
Sbjct: 268 HLGSTITKVDIFRDA-ATIMINYIDQIRDQGFEVDYLNIGGGLGIDYYHSGAILPTPRDL 326

Query: 54  VKTVNDSIQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHG 113
           + TV D +          L +I EPGR        LV  V G +  G +    ID  +  
Sbjct: 327 IDTVRDLVIS------RGLNLIIEPGRSLIANTCCLVNRVTGVKSNGSKNFIVIDGSMAE 380

Query: 114 SFKLAANDPASLMYKVLLQNEDGAGPITSSTIFGPTCDSLDVVISGCELSELQVNDLIVF 173
             + +  D  +  +  L+         T+  + GP C+S D +  G EL        +V 
Sbjct: 381 LIRPSLYD--AYQHIELVSPAPSNAETTTFDVVGPVCESADFLGKGRELPTPAKGTGLVV 438

Query: 174 YNMGAYTTSFASKFN 188
           ++ GAY  S AS +N
Sbjct: 439 HDAGAYCMSMASTYN 453