Jatropha Genome Database

JcCA0045261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045261.10 + phase: 0 /TE/partial
         (256 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g42470.1                                                        89   5e-18
Glyma10g16060.1                                                        58   1e-08
Glyma01g07740.1                                                        55   8e-08
Glyma14g17420.1                                                        55   1e-07

>Glyma15g42470.1 
          Length = 1094

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 39/276 (14%)

Query: 1   MSAMRCEIEKFDGRMNFALWQVQVKDVLIQSGLHKVLKGKPVXXXXXXXXXXXXXXXXXX 60
           M + + E+EKF G+ +F LW+++++ +L+Q  L + L G+                    
Sbjct: 1   MGSAKYEVEKFTGQNDFGLWRLKMRALLVQQDLVEALDGEAKLEKMMADGDK-------- 52

Query: 61  XXXXXWEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQ 120
                 + L  KA   I + L   VL  V                Y  K++ N LYLK+ 
Sbjct: 53  ------KALLQKAHGAIILSLGDKVLRQVSKETTAAGVWSKLEGLYMTKSLVNRLYLKQS 106

Query: 121 FHTLKMAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYG 180
            ++ KM E   + + L + N ++ +LE + V  +DED+AL L+  LP +Y H K  L +G
Sbjct: 107 LYSFKMHEDRSVGEQLDLFNKLILDLENIDVTIDDEDQALLLLCYLPKSYSHFKETLLFG 166

Query: 181 SKEVVYADVVSKLLTEERRLNEMK--------------NKSYEDSALFVGTXXXXXXXXX 226
              V   +V + L ++E  LNE K               K+++  + F            
Sbjct: 167 RDSVSLDEVQTALNSKE--LNERKEKKSSASGEGLTARGKTFKKDSEFDKKKQKPENQKN 224

Query: 227 -----XXVVCWVCGQTRHMRKDCP----NGGADSAR 253
                  + C+ C +  H RK CP    NGG+++ +
Sbjct: 225 GEGNIFKIRCYHCKKEGHTRKVCPERQKNGGSNNRK 260


>Glyma10g16060.1 
          Length = 879

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 42/74 (56%)

Query: 126 MAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
           M EGT L DHL  LNSI+ EL  + V+ ED+D A+ L+ SLP +YE     L  G + V 
Sbjct: 1   MKEGTSLKDHLDELNSILMELRDIDVKIEDDDAAMILLASLPPSYESFVNSLSVGKECVT 60

Query: 186 YADVVSKLLTEERR 199
             +V S L   E R
Sbjct: 61  MEEVKSSLYLRELR 74


>Glyma01g07740.1 
          Length = 334

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 66  WEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHTLK 125
           W ++  +  S IR+ LA  +  N L               Y  K+++N L LK   + LK
Sbjct: 30  WTKIQRRGVSTIRLALAFEIKHNALKETTPKALWEKLENIYVSKSLTNRLCLKMDLYQLK 89

Query: 126 MAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
              G  L DH++  N  VS+L     +   E   L L+ SLP +++ +  +L    +  +
Sbjct: 90  TEMGGDLDDHINKFNREVSQLLNANDKISYEGHVLLLLASLPRSFKALVQMLLV-RRSTL 148

Query: 186 YADVVSKLLTEERRLNEMKNKSYEDSALFV 215
             D V+ +L E  R+    N  YE +A+ V
Sbjct: 149 NLDEVTTVLRENERMMRTGNVDYEHNAIAV 178


>Glyma14g17420.1 
          Length = 1459

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 25/149 (16%)

Query: 128 EGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVVYA 187
           E   + + L + N ++ +LE + V  +DED+AL L+ SLP +Y H K  L +G   V   
Sbjct: 420 EDRSVEEQLDLFNKLILDLENIDVTIDDEDQALLLLCSLPKSYSHFKETLLFGRDSVSLD 479

Query: 188 DVVSKLLTEERRLNEMK--------------NKSYEDSALFVGTXXXXXXXXX-----XX 228
            V + L  + ++LNE K               K++   + F                   
Sbjct: 480 KVQAAL--KSKKLNERKEKKSSTSGEGLIARGKTFNKDSKFDKNKQKPENQKNDEGKIFK 537

Query: 229 VVCWVCGQTRHMRKDCP----NGGADSAR 253
           + C+ C +  H RK CP    NGG+++ +
Sbjct: 538 IRCYHCKKEGHTRKVCPERQKNGGSNNRK 566