Jatropha Genome Database

JcCA0045131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045131.20 + phase: 0 /partial
         (111 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g22750.1                                                        87   5e-18
Glyma17g27530.1                                                        85   2e-17
Glyma04g08890.1                                                        79   1e-15
Glyma06g08980.1                                                        75   1e-14
Glyma06g02670.1                                                        64   3e-11
Glyma04g02630.1                                                        64   3e-11

>Glyma14g22750.1 
          Length = 199

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 64/118 (54%), Gaps = 8/118 (6%)

Query: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSSLKNKKIESSNX-------XXXXXXXXXXXXX 53
           MATE+K +  K+KS    DGSSK K+DSS   KK+ESS+                     
Sbjct: 1   MATETKSSTVKLKSRA-PDGSSKGKIDSSAVRKKVESSSKLPADSKMKSVSTVTKSEVKS 59

Query: 54  XXXXXXXXXXXXXXXXXXXXXXYSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
                                 YSLPGQK+DPPE++EPLR+FYESLSKQIP+SEMAEF
Sbjct: 60  KSTSSSSKTVTQTTTKAREKKVYSLPGQKHDPPEQKEPLRVFYESLSKQIPTSEMAEF 117


>Glyma17g27530.1 
          Length = 198

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 65/118 (55%), Gaps = 8/118 (6%)

Query: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSSLKNKKIESSNX-------XXXXXXXXXXXXX 53
           MATE+ ++  K+KSS   DGSSK K+DSS   KK+ESS+                     
Sbjct: 1   MATETIRSSVKLKSSA-PDGSSKGKIDSSAVRKKVESSSKLPADSKMKSVSTVTKSEVKS 59

Query: 54  XXXXXXXXXXXXXXXXXXXXXXYSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
                                 YSLPGQK+DPPE++EPLR+FYESLSKQIP+SEMAEF
Sbjct: 60  KSTSSSSKTVTKTTTKVREKKVYSLPGQKHDPPEQKEPLRVFYESLSKQIPTSEMAEF 117


>Glyma04g08890.1 
          Length = 208

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 60/125 (48%), Gaps = 14/125 (11%)

Query: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSSLKNKKIESS--------------NXXXXXXX 46
           MAT +K T+ K   SI QD SSK K+DS    KK+ +S                      
Sbjct: 1   MATYTKSTMVKGVKSIAQDVSSKPKIDSLALKKKLNTSIKHPPDSKLKFVTTTVTKSEVK 60

Query: 47  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSLPGQKYDPPEEREPLRIFYESLSKQIPSS 106
                                        YSLPGQK+DPPE++EPLRIFYESLSKQIP+S
Sbjct: 61  SKPVTTSSASSKTITKTTTTKTKVREKKVYSLPGQKHDPPEQKEPLRIFYESLSKQIPTS 120

Query: 107 EMAEF 111
           EMAEF
Sbjct: 121 EMAEF 125


>Glyma06g08980.1 
          Length = 207

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 59/125 (47%), Gaps = 14/125 (11%)

Query: 1   MATESKQTVAKVKSSIHQDGSSKIKVDSSLKNKKIESS--------------NXXXXXXX 46
           MAT +K T+ K   S  QD SSK K+DS    KK+ +S                      
Sbjct: 1   MATYTKSTIVKGVKSSAQDVSSKPKIDSLALKKKLNTSIKRPPDSNLKSVTTTVTKSEVK 60

Query: 47  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSLPGQKYDPPEEREPLRIFYESLSKQIPSS 106
                                        YSLPGQK+DPPE++EPLRIFYESLSKQ+P+S
Sbjct: 61  SKPVTASSASSKTITTTTTTKTKVREKKVYSLPGQKHDPPEQKEPLRIFYESLSKQMPTS 120

Query: 107 EMAEF 111
           EMAEF
Sbjct: 121 EMAEF 125


>Glyma06g02670.1 
          Length = 236

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           Y LPGQK DPPEE++PLRIFYE+L KQ+PSSEM++ 
Sbjct: 92  YDLPGQKRDPPEEKDPLRIFYETLFKQVPSSEMSQI 127


>Glyma04g02630.1 
          Length = 225

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           Y LPGQK DPPEE++PLRIFYE+L KQ+PSSEM++ 
Sbjct: 83  YDLPGQKRDPPEEKDPLRIFYETLFKQVPSSEMSQI 118