Jatropha Genome Database

JcCA0044211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0044211.20 - phase: 0 /pseudo/partial
         (99 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g22870.1                                                        94   3e-20
Glyma07g03230.1                                                        84   3e-17
Glyma01g09040.1                                                        82   1e-16

>Glyma08g22870.1 
          Length = 204

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 58/83 (69%)

Query: 17  LQADLLGNAVVRPADIETTXXXXXXXXXXXIGVWKEEEIFATGEKVKTATTFHPNLHEQQ 76
           +QADL+G  ++RPADIETT           IG+WKE+ +F T EK+K A  F P + E+ 
Sbjct: 122 IQADLVGCPIIRPADIETTALGAAYAAGLAIGIWKEDYVFNTEEKLKNANVFRPLMTEEL 181

Query: 77  RKKKVESWCKAVEKSFGLADLSI 99
           RKKKV+SWCKAV K+F LADL++
Sbjct: 182 RKKKVDSWCKAVSKTFDLADLAL 204


>Glyma07g03230.1 
          Length = 519

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 57/83 (68%)

Query: 17  LQADLLGNAVVRPADIETTXXXXXXXXXXXIGVWKEEEIFATGEKVKTATTFHPNLHEQQ 76
           +QADL+G  V+RPADIETT            G+WKE+ IF T EK+K A  F P + E+ 
Sbjct: 437 IQADLVGCPVIRPADIETTALGAAYAAGLATGIWKEDFIFNTEEKLKNARVFRPVMTEEV 496

Query: 77  RKKKVESWCKAVEKSFGLADLSI 99
           RKKKV+SWCKAV K+F LADL++
Sbjct: 497 RKKKVDSWCKAVSKTFDLADLAL 519


>Glyma01g09040.1 
          Length = 213

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 49/77 (63%)

Query: 21  LLGNAVVRPADIETTXXXXXXXXXXXIGVWKEEEIFATGEKVKTATTFHPNLHEQQRKKK 80
           L+G   +RP DIETT           IG+WKE+ +F T +K+K A  F P + E+ RKKK
Sbjct: 135 LVGCPAIRPTDIETTTLGAAYTVGLAIGIWKEDYLFNTKDKLKNANVFRPLMTEELRKKK 194

Query: 81  VESWCKAVEKSFGLADL 97
           V SWCKAV K+F LADL
Sbjct: 195 VASWCKAVSKTFDLADL 211