Jatropha Genome Database

JcCA0042831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0042831.10 - phase: 0 /pseudo
         (342 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g11780.1                                                       292   4e-79
Glyma12g04070.1                                                       224   1e-58
Glyma11g11780.2                                                       205   7e-53
Glyma11g11780.3                                                       200   2e-51
Glyma12g04070.2                                                       138   1e-32

>Glyma11g11780.1 
          Length = 342

 Score =  292 bits (747), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 161/336 (47%), Positives = 209/336 (62%), Gaps = 17/336 (5%)

Query: 1   MDIRLDWLLRAAWISATLPILIASFPSSRLNSFHQLLLGFSRRGKTMQPSSH-FTVPQRF 59
           M++ L  +LR AW++ATLPI++AS P+ +LN     LLGF+RRGK M  SS   T+ QRF
Sbjct: 10  MEVVLVQMLRLAWVAATLPIIVASIPTPKLNCLRGTLLGFARRGKIMHSSSQKVTISQRF 69

Query: 60  FLHFYLVGVALTTFLLIIIWGYAYKLASLDSGSLDYSTAASQLVGGSQIYSLHVSHFPTL 119
           FLHFY+V    TT LL+  W YAY +  L      YST  S L GGS I +   +H   L
Sbjct: 70  FLHFYVVAFIWTTLLLVGTWAYAYSMVPLVVEPFSYSTITSFLTGGSTIRT--DTH--KL 125

Query: 120 AYRHKIWISVFLLLLMEMQVLRRLYETVYVLKYSSSARMHIFGYLVGLFFYTVAPLTLCY 179
              +  W +VFLLL+ME+ VLRRLYET++V  YS SARMH  GYL GLFFY  APL+LC 
Sbjct: 126 RQGYVAWQAVFLLLMMEVHVLRRLYETIHVFNYSPSARMHAVGYLTGLFFYVGAPLSLCG 185

Query: 180 SCAFEAFNFAAYQMIEANVKNQQTVAV-DFDWWRLVKPFVKLGWCHWVGAAIFAWGWLHQ 238
            CA E FNF A  + E  VK +  + V + ++W++V P  KLGW HW+GAA+F WGW+HQ
Sbjct: 186 GCAVEVFNFLANLVTEFIVKGKNQMQVTELEFWQVVNPLFKLGWKHWIGAAVFLWGWIHQ 245

Query: 239 LRCHAILGSLREDREQNEEYGIPRGDWFEIVSSPHYLAEMRRYDETLSRGYLYFCHVVGS 298
            +CH ILGSLR  R Q +EY IP GDWFEIVSSPHYL+E+           +Y   VV +
Sbjct: 246 HQCHKILGSLRHSR-QADEYVIPHGDWFEIVSSPHYLSEI----------VIYASFVVAT 294

Query: 299 TFPGLSGLMRFHFVTSSTVFRCRDLELIFA*KYADF 334
               L+  + F FV ++  F   +    +  K+ D+
Sbjct: 295 GGSNLTIWLLFVFVVANLSFAAVETHGWYRQKFEDY 330


>Glyma12g04070.1 
          Length = 261

 Score =  224 bits (570), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 120/257 (46%), Positives = 161/257 (62%), Gaps = 6/257 (2%)

Query: 1   MDIRLDWLLRAAWISATLPILIASFPSSRLNSFHQLLLGFSRRGKTMQPSSHFTVPQRFF 60
           M++ L  +LR AW++ATLPI++AS P+ +L+     LL F+RRGK M  S  FT+ QRFF
Sbjct: 8   MELVLLQILRLAWLAATLPIIVASIPTPKLSCLRATLLAFARRGKIMHSSQKFTISQRFF 67

Query: 61  LHFYLVGVALTTFLLIIIWGYAYKLASLDSGSLDYSTAASQLVGGSQIYSLHVSHFPTLA 120
           LHFY+V    TT LL+  W YAY +  L      YST  S L GGS I +        L 
Sbjct: 68  LHFYIVAFIWTTLLLLGTWAYAYNMVPLVVEPFSYSTITSFLTGGSTIKTDTYK----LR 123

Query: 121 YRHKIWISVFLLLLMEMQVLRRLYETVYVLKYSSSARMHIFGYLVGLFFYTVAPLTLCYS 180
             +  W +VFLLL+ME+QVLRRLYET +V  YS SARMH+ GYL GLFFY  APL+LC  
Sbjct: 124 QGYVAWQAVFLLLMMEVQVLRRLYETRHVFNYSPSARMHVIGYLTGLFFYVGAPLSLCGG 183

Query: 181 CAFEAFNFAAYQMIEANVKNQQTVAV-DFDWWRLVKPFVKLGWCHWVGAAIFAW-GWLHQ 238
           CA E FNF A  + +  VK +  + V + ++W++V P  KLGW HW+GAA+F W G+++ 
Sbjct: 184 CAVEVFNFLANLVTKFIVKGKNQMQVTELEFWQVVNPLFKLGWKHWIGAAVFLWVGFINT 243

Query: 239 LRCHAILGSLREDREQN 255
                ++    +DR+ N
Sbjct: 244 SAIRFLVLYDIQDRQMN 260


>Glyma11g11780.2 
          Length = 248

 Score =  205 bits (521), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 115/242 (47%), Positives = 149/242 (61%), Gaps = 16/242 (6%)

Query: 94  DYSTAASQLVGGSQIYSLHVSHFPTLAYRHKIWISVFLLLLMEMQVLRRLYETVYVLKYS 153
            YST  S L GGS I +   +H   L   +  W +VFLLL+ME+ VLRRLYET++V  YS
Sbjct: 10  SYSTITSFLTGGSTIRT--DTH--KLRQGYVAWQAVFLLLMMEVHVLRRLYETIHVFNYS 65

Query: 154 SSARMHIFGYLVGLFFYTVAPLTLCYSCAFEAFNFAAYQMIEANVKNQQTVAV-DFDWWR 212
            SARMH  GYL GLFFY  APL+LC  CA E FNF A  + E  VK +  + V + ++W+
Sbjct: 66  PSARMHAVGYLTGLFFYVGAPLSLCGGCAVEVFNFLANLVTEFIVKGKNQMQVTELEFWQ 125

Query: 213 LVKPFVKLGWCHWVGAAIFAWGWLHQLRCHAILGSLREDREQNEEYGIPRGDWFEIVSSP 272
           +V P  KLGW HW+GAA+F WGW+HQ +CH ILGSLR  R Q +EY IP GDWFEIVSSP
Sbjct: 126 VVNPLFKLGWKHWIGAAVFLWGWIHQHQCHKILGSLRHSR-QADEYVIPHGDWFEIVSSP 184

Query: 273 HYLAEMRRYDETLSRGYLYFCHVVGSTFPGLSGLMRFHFVTSSTVFRCRDLELIFA*KYA 332
           HYL+E+           +Y   VV +    L+  + F FV ++  F   +    +  K+ 
Sbjct: 185 HYLSEI----------VIYASFVVATGGSNLTIWLLFVFVVANLSFAAVETHGWYRQKFE 234

Query: 333 DF 334
           D+
Sbjct: 235 DY 236


>Glyma11g11780.3 
          Length = 276

 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/210 (49%), Positives = 135/210 (64%), Gaps = 12/210 (5%)

Query: 126 WISVFLLLLMEMQVLRRLYETVYVLKYSSSARMHIFGYLVGLFFYTVAPLTLCYSCAFEA 185
           W +VFLLL+ME+ VLRRLYET++V  YS SARMH  GYL GLFFY  APL+LC  CA E 
Sbjct: 66  WQAVFLLLMMEVHVLRRLYETIHVFNYSPSARMHAVGYLTGLFFYVGAPLSLCGGCAVEV 125

Query: 186 FNFAAYQMIEANVKNQQTVAV-DFDWWRLVKPFVKLGWCHWVGAAIFAWGWLHQLRCHAI 244
           FNF A  + E  VK +  + V + ++W++V P  KLGW HW+GAA+F WGW+HQ +CH I
Sbjct: 126 FNFLANLVTEFIVKGKNQMQVTELEFWQVVNPLFKLGWKHWIGAAVFLWGWIHQHQCHKI 185

Query: 245 LGSLREDREQNEEYGIPRGDWFEIVSSPHYLAEMRRYDETLSRGYLYFCHVVGSTFPGLS 304
           LGSLR  R Q +EY IP GDWFEIVSSPHYL+E+           +Y   VV +    L+
Sbjct: 186 LGSLRHSR-QADEYVIPHGDWFEIVSSPHYLSEI----------VIYASFVVATGGSNLT 234

Query: 305 GLMRFHFVTSSTVFRCRDLELIFA*KYADF 334
             + F FV ++  F   +    +  K+ D+
Sbjct: 235 IWLLFVFVVANLSFAAVETHGWYRQKFEDY 264



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query: 1  MDIRLDWLLRAAWISATLPILIASFPSSRLNSFHQLLLGFSRRGKTMQPSSH 52
          M++ L  +LR AW++ATLPI++AS P+ +LN     LLGF+RRGK M  SS 
Sbjct: 10 MEVVLVQMLRLAWVAATLPIIVASIPTPKLNCLRGTLLGFARRGKIMHSSSQ 61


>Glyma12g04070.2 
          Length = 170

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 102/164 (62%), Gaps = 6/164 (3%)

Query: 94  DYSTAASQLVGGSQIYSLHVSHFPTLAYRHKIWISVFLLLLMEMQVLRRLYETVYVLKYS 153
            YST  S L GGS I +        L   +  W +VFLLL+ME+QVLRRLYET +V  YS
Sbjct: 10  SYSTITSFLTGGSTIKT----DTYKLRQGYVAWQAVFLLLMMEVQVLRRLYETRHVFNYS 65

Query: 154 SSARMHIFGYLVGLFFYTVAPLTLCYSCAFEAFNFAAYQMIEANVKNQQTVAV-DFDWWR 212
            SARMH+ GYL GLFFY  APL+LC  CA E FNF A  + +  VK +  + V + ++W+
Sbjct: 66  PSARMHVIGYLTGLFFYVGAPLSLCGGCAVEVFNFLANLVTKFIVKGKNQMQVTELEFWQ 125

Query: 213 LVKPFVKLGWCHWVGAAIFAW-GWLHQLRCHAILGSLREDREQN 255
           +V P  KLGW HW+GAA+F W G+++      ++    +DR+ N
Sbjct: 126 VVNPLFKLGWKHWIGAAVFLWVGFINTSAIRFLVLYDIQDRQMN 169