Jatropha Genome Database

JcCA0038081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0038081.10 - phase: 1 /pseudo/partial
         (198 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g01450.1                                                        50   2e-06

>Glyma08g01450.1 
          Length = 422

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 72/170 (42%), Gaps = 19/170 (11%)

Query: 39  LQQRKNLFPGSLSQGYRSGKQFPFLQC-----TSSSAVPRESV--CQTIXXXXXXXXXXX 91
           L  +++LF GS   GY+ GK   F+Q        S  +P  SV   Q             
Sbjct: 262 LVDKQDLFLGSSPTGYKEGKHLAFMQGDHTLNNQSPHLPGASVGPAQMFLRTSPYSESGG 321

Query: 92  XXQKMFSDGANRVIDSN--RALSLLSS-PSAQTREIGLSHMVQPDLNPPARSLNPSLNFN 148
              KMF D        N  RALSLLSS P   +   GL+ MV P  +P  + L  SL+ N
Sbjct: 322 LRCKMFCDSLTGSAHGNTSRALSLLSSPPQPHSPGNGLNQMVNPH-SPLMQPLGLSLHDN 380

Query: 149 ALGMGSGPVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
           +L    G V+ VL  +GS     H   M  I  +GS  N +     F WE
Sbjct: 381 SL----GSVDPVLGPNGSD----HSSSMHHIGSNGSQVNEAPPLFPFQWE 422