Jatropha Genome Database

JcCA0028741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028741.20 - phase: 0 /TE/pseudo/partial
         (638 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g25710.1                                                        67   4e-11
Glyma09g15130.2                                                        67   7e-11
Glyma08g10320.1                                                        65   3e-10
Glyma04g13970.1                                                        65   3e-10
Glyma04g34950.1                                                        63   8e-10
Glyma18g38460.1                                                        63   9e-10
Glyma10g16030.1                                                        61   4e-09
Glyma11g17510.1                                                        52   2e-06

>Glyma03g25710.1 
          Length = 230

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 70  MISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLK 129
           MI    L FSF E   F    Q  L+P  K   R+     + +LY   KK+++ + S++ 
Sbjct: 1   MIIEHDLPFSFVEHRRFKELLQ-YLHPDVKVPSRHVATMNVNNLYESEKKKMKCMLSKVP 59

Query: 130 IRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVSIL 189
            R+S+  DVW+       Y+ +T H++D +WK+  +++ F  F   Y+   + +VI   L
Sbjct: 60  SRISLTSDVWTS-CTSEGYISLTAHYVDANWKLNSKMLNFSHFPPPYSGREMAKVIYDFL 118

Query: 190 DEYRLTKKNF 199
           +E+ + +K F
Sbjct: 119 EEWGIEQKIF 128


>Glyma09g15130.2 
          Length = 672

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 83/148 (56%), Gaps = 2/148 (1%)

Query: 52  NLSLFKYSEKIQKEELAKMISMEHLSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTII 111
           N    K+ ++  + +LA+MI +     S  E+VGF  +  K L P  +  P ++++ + I
Sbjct: 119 NFGSSKFDQERSQLDLARMIILHGYPLSLVEQVGFKVFV-KNLQPLFEFTPNSSVEISCI 177

Query: 112 SLYNKGKKELELLFSQLKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRV 171
            +Y + K+++  + ++L  R+++  + WS   +   Y+ ++ H+ID++W +QK+++ F  
Sbjct: 178 DIYRREKEKVFDMINRLHGRINLSIETWSST-ENSLYLCLSAHYIDEEWTLQKKLLNFVT 236

Query: 172 FDDKYTANNIYRVIVSILDEYRLTKKNF 199
            D  +T + +  VI+  L+E+ +  K F
Sbjct: 237 LDSSHTEDLLPEVIIKCLNEWDIDCKLF 264


>Glyma08g10320.1 
          Length = 736

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 34  PTKIGVDRSQQQISGNASNLSLFKYSEKIQKEELAKMISMEHLSFSFGEKVGFNNYCQKA 93
           PT+  V  S Q++  N +   L ++ ++   + LAKMI ++ L F F E  GF  +   A
Sbjct: 111 PTESPVVASLQELGNNLTYDELVEFHQEFCTQALAKMIIIDELPFKFVENKGFGEFV-TA 169

Query: 94  LNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLKIRVSICYDVWSDHWQMH--SYMGI 151
             P  K   + TI    ++L+   K +L+   SQ K  +S+  D W+    +H  +Y+ +
Sbjct: 170 FQPQFKIPSQITIVEDCMNLHRVAKAKLKFNLSQNKQMMSLTTDTWT---SIHNKNYLCV 226

Query: 152 TCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVSILDEYRLTK 196
           T H ID+ W++ K I+ F +  D +  + I + +   L E+ +TK
Sbjct: 227 TAHCIDERWELIKMILSFVLIPD-HKGDTIGKALEKCLKEWEITK 270


>Glyma04g13970.1 
          Length = 432

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 6/145 (4%)

Query: 59  SEKIQKEELAKMISM---EH-LSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLY 114
           ++KI +  + +MIS+   EH L FSF E   F    Q  L+P  K   R      + +LY
Sbjct: 54  NKKIDQSVVYEMISITIIEHDLPFSFVEHRRFKELLQ-YLHPDVKVPSRRVATMNVNNLY 112

Query: 115 NKGKKELELLFSQLKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDD 174
           +  KK ++ + S++  R+S+  DVW+       Y+ +T H++D +W++  +++ F  F  
Sbjct: 113 DSEKKNMKCMLSKVPSRISLTSDVWTS-CTFEGYISLTAHYVDANWELNSKMLNFSHFPP 171

Query: 175 KYTANNIYRVIVSILDEYRLTKKNF 199
            +    + +VI   L+E+ + KK F
Sbjct: 172 PHLGREMAKVIYGFLEEWGIEKKIF 196


>Glyma04g34950.1 
          Length = 680

 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 3/136 (2%)

Query: 65  EELAKMISMEH-LSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELEL 123
           E +  M+ +EH L FSF E   F     + L+P  K   R      + +LY   KK+++ 
Sbjct: 155 ENMISMMIIEHDLPFSFVEHRRFKELL-RYLHPDVKVPSRCVATMNVNNLYESEKKKMKC 213

Query: 124 LFSQLKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYR 183
           + S++  R+S+  DVW+       Y+ +T H++D +WK+  +++ F  F   ++     +
Sbjct: 214 MLSKVPSRISLTSDVWTS-CTSEGYISLTAHYVDANWKLNSKMLNFSHFPPPHSGREKAK 272

Query: 184 VIVSILDEYRLTKKNF 199
           VI   L+E+ + +K F
Sbjct: 273 VIYGFLEEWGIEQKVF 288


>Glyma18g38460.1 
          Length = 267

 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 2/119 (1%)

Query: 76  LSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLKIRVSIC 135
           L FSF E   F    Q  L+P  K   R+     + +LY+  KK+++ + S++  R+S+ 
Sbjct: 3   LPFSFVEHRRFKELLQ-YLHPDVKVPSRHVATMNVNNLYDFEKKKMKCMLSKVPSRISLT 61

Query: 136 YDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVSILDEYRL 194
            DVW+       Y+ +T H++D +WK+  +++ F  F   ++   + +VI  +L+E+R+
Sbjct: 62  SDVWTS-CNSEGYISLTTHYVDANWKLNSKMLNFSHFPHPHSGREMAKVIYGVLEEWRI 119


>Glyma10g16030.1 
          Length = 234

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 66  ELAKMISMEH-LSFSFGEKVGFNNYCQKALNPSAKRVPRNTIKRTIISLYNKGKKELELL 124
           E   M+ +EH L FSF E   F    Q  L+   K   R      + +LY   KK+++ +
Sbjct: 36  ETISMMIIEHGLPFSFVEHRRFKELLQ-YLHHDVKVPSRRVATMNVNNLYESEKKKMKCM 94

Query: 125 FSQLKIRVSICYDVWSDHWQMHSYMGITCHWIDDDWKIQKRIIGFRVFDDKYTANNIYRV 184
            S++  R+S+  DVW+       Y+ +T +++D +WK+  +++ F  F   ++ + + +V
Sbjct: 95  LSKVPSRISLTSDVWTS-CTSEGYISLTAYYVDANWKLNSKMLNFSHFPPPHSGHEMAKV 153

Query: 185 IVSILDEYRLTKKNF 199
           I   L+E+ + +K F
Sbjct: 154 IYGFLEEWGIEQKIF 168


>Glyma11g17510.1 
          Length = 348

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 58/106 (54%), Gaps = 1/106 (0%)

Query: 94  LNPSAKRVPRNTIKRTIISLYNKGKKELELLFSQLKIRVSICYDVWSDHWQMHSYMGITC 153
           +N   K V RNT+  +++ L+ + K++L+    +   R+ +  D W+   Q   Y+ +T 
Sbjct: 6   INSDVKHVSRNTLVSSLLKLHGEMKEKLKYSIHKCHNRICLTSDCWTTCTQ-EGYICLTA 64

Query: 154 HWIDDDWKIQKRIIGFRVFDDKYTANNIYRVIVSILDEYRLTKKNF 199
           H++D++WK+  +I+ F   +  +T  ++   +  +L ++ + +K F
Sbjct: 65  HFVDNNWKLNSKILAFCKLEPPHTGEDLANKVFEVLTKWEIDRKIF 110