Jatropha Genome Database

JcCA0028391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028391.10 + phase: 0 
         (77 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g18480.1                                                        90   7e-19
Glyma08g36090.1                                                        84   3e-17
Glyma06g16810.1                                                        74   3e-14
Glyma08g00800.1                                                        67   5e-12
Glyma06g16800.1                                                        66   7e-12
Glyma05g33200.1                                                        53   8e-08

>Glyma16g18480.1 
          Length = 96

 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 53/73 (72%), Gaps = 2/73 (2%)

Query: 7  LFSTXXXXXXXXXATET-GP-MVAEARTCESLSHRFKGICVRNSNCAAICQTEGFQGGHC 64
          L ST         ATE  GP MVAEARTCES SHRFKG C+ ++NC ++C+TE F GGHC
Sbjct: 24 LVSTIFVLLLLLVATEMMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTERFTGGHC 83

Query: 65 RGLRRRCFCTKHC 77
          RG RRRCFCTKHC
Sbjct: 84 RGFRRRCFCTKHC 96


>Glyma08g36090.1 
          Length = 62

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 46/55 (83%), Gaps = 1/55 (1%)

Query: 24 GP-MVAEARTCESLSHRFKGICVRNSNCAAICQTEGFQGGHCRGLRRRCFCTKHC 77
          GP MVAEARTCES SHRFKG C+ ++NC ++C+TEGF GGHCRG  RRCFCTK C
Sbjct: 2  GPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTEGFSGGHCRGFSRRCFCTKEC 56


>Glyma06g16810.1 
          Length = 73

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 38/50 (76%)

Query: 28 AEARTCESLSHRFKGICVRNSNCAAICQTEGFQGGHCRGLRRRCFCTKHC 77
           E R CES SHRFKG+C+   NCA++C  EGF GG CRG RRRCFCT+HC
Sbjct: 24 TEGRHCESKSHRFKGMCLSKHNCASVCHLEGFTGGKCRGFRRRCFCTRHC 73


>Glyma08g00800.1 
          Length = 55

 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 37/50 (74%)

Query: 28 AEARTCESLSHRFKGICVRNSNCAAICQTEGFQGGHCRGLRRRCFCTKHC 77
          AE R C S SH FKG+C  ++NCA +C+TEGF GG C G RRRCFCT+ C
Sbjct: 6  AEGRDCSSKSHGFKGLCFSDTNCAHVCRTEGFTGGDCGGFRRRCFCTRIC 55


>Glyma06g16800.1 
          Length = 75

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 29 EARTCESLSHRFKGICVRNSNCAAICQTEGFQGGHCRGLRRRCFCTKHC 77
          E R CES SH F G+C R+ NCA +C+ EGF GG C+G RRRCFCT+ C
Sbjct: 27 EGRVCESQSHGFHGLCNRDHNCALVCRNEGFSGGRCKGFRRRCFCTRIC 75


>Glyma05g33200.1 
          Length = 74

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%)

Query: 20 ATETGPMVAEARTCESLSHRFKGICVRNSNCAAICQTEGFQGGHCRGLRRRCFCTKHC 77
          A++     AEA+ C +  H F+G C+ +  CA +C+++GF GG CRG  R+CFC++ C
Sbjct: 17 ASDVTVKRAEAKDCLTRRHGFQGRCLFDRQCAHVCRSDGFIGGQCRGPLRKCFCSRPC 74