Jatropha Genome Database

JcCA0022221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0022221.10 - phase: 0 /partial
         (201 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g33900.1                                                        55   5e-08
Glyma03g33900.2                                                        53   2e-07

>Glyma03g33900.1 
          Length = 1587

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 55/97 (56%)

Query: 88   DPSFHTNYVIPDIPKLAGSDPLPIEIERILRDERHELRMHEDMVLHIISEREKEMREIFK 147
            DP      +I ++ + A  D LPIE+ERI +++    ++HE  +L + S+ EKE+ ++  
Sbjct: 1440 DPLLGEMSIIENMNEEAFIDLLPIEMERIEKEKEEAFKIHEQKILQLQSDYEKEVEKLSV 1499

Query: 148  KYEVLLQDAERAVHQKMEDHRTNLQYVYLSKLLAETL 184
            KY++LLQ+    V  K  +  T  + V  +K+LA+  
Sbjct: 1500 KYKMLLQNVNTEVALKRTELETQCELVLRNKVLAQVW 1536


>Glyma03g33900.2 
          Length = 211

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 55/97 (56%)

Query: 88  DPSFHTNYVIPDIPKLAGSDPLPIEIERILRDERHELRMHEDMVLHIISEREKEMREIFK 147
           DP      +I ++ + A  D LPIE+ERI +++    ++HE  +L + S+ EKE+ ++  
Sbjct: 86  DPLLGEMSIIENMNEEAFIDLLPIEMERIEKEKEEAFKIHEQKILQLQSDYEKEVEKLSV 145

Query: 148 KYEVLLQDAERAVHQKMEDHRTNLQYVYLSKLLAETL 184
           KY++LLQ+    V  K  +  T  + V  +K+LA+  
Sbjct: 146 KYKMLLQNVNTEVALKRTELETQCELVLRNKVLAQVW 182