Jatropha Genome Database

JcCA0020851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020851.10 - phase: 0 
         (194 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g04970.1                                                        50   2e-06
Glyma17g16180.1                                                        49   2e-06

>Glyma17g04970.1 
          Length = 197

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 65/130 (50%), Gaps = 11/130 (8%)

Query: 61  QKGSDLINRSCEKTLYKDNCEEAL---AAGRTNDMPSLTKDALEIASLSATEISKAITGM 117
           + G DL+  +C+ TL+ + C   L    A +T+D+  L + AL +++  A +    +  +
Sbjct: 34  EGGEDLVTATCKHTLHFELCISTLRSVPASKTSDLKVLAEIALNLSTTYAADTLSYVHEL 93

Query: 118 LDRTSFE--------FVKERLRDCSKIYKSSIDQIKKAKVVVDSKAYNDVNTLATVVITG 169
              +S          +    L DC++ Y  +I+ +K +K  +     + V+TL +  ++ 
Sbjct: 94  QSNSSAANYGSNNIIYASRCLSDCAEEYSEAIENLKDSKEALADGDCDQVDTLVSAAMSD 153

Query: 170 SESCEDGFHE 179
           +E+CEDGF +
Sbjct: 154 AETCEDGFKD 163


>Glyma17g16180.1 
          Length = 179

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 15/145 (10%)

Query: 46  IFFFALFFPMISTSHQKGSDLINRSC------EKTLYKDNCEEALAAGRTNDMPSLTKD- 98
           IFFF   F     S+  GS+LI++SC      +  L  D C  A  + + +  PS  KD 
Sbjct: 9   IFFFMFLF---QCSNSNGSNLISQSCMEASKIDPILEYDFCV-AFLSNKWHTPPSNLKDF 64

Query: 99  ---ALEIASLSATEISKAITGMLDRTSFE-FVKERLRDCSKIYKSSIDQIKKAKVVVDSK 154
              +++    +AT +   I+  L   SF+ +VK+ LR C  +Y  S+  +  A V   +K
Sbjct: 65  VVTSIQQTKSNATNMVSIISNFLKNKSFDPYVKDCLRTCFDLYSDSVSALDNAVVAFKNK 124

Query: 155 AYNDVNTLATVVITGSESCEDGFHE 179
            ++  +T  +V +    +C+  F++
Sbjct: 125 DFDTASTKVSVSLDSPVACQGLFND 149