Jatropha Genome Database

JcCA0020581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020581.10 - phase: 2 /TE
         (269 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g16600.1                                                        51   1e-06

>Glyma01g16600.1 
          Length = 2962

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 57  AKEHNGLYYFD-----TNSSNITLVSLAANTSTIDIWHLHLGHPGQHVYKK-FVTLDHNL 110
           A+E NGLYY       T S ++   S   +   I ++H  +GHP   V K  F +L  NL
Sbjct: 507 AREWNGLYYIKDPNMPTRSHSLISESTMTSKEKIQLYHCRMGHPSFQVVKAIFPSLFKNL 566

Query: 111 FFSNKYTSLIWHLAKQTHLPFPTSYISTNSSFELIHVNVWRPYSTSFLNG 160
              + +   +  LAK   + FP S   ++  F L+H +VW P     ++G
Sbjct: 567 NVGSLHCE-VCELAKHKRVSFPISNKMSSFPFSLVHTDVWGPAHVPNISG 615