Jatropha Genome Database

JcCA0020441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020441.10 - phase: 0 /partial
         (227 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g22260.1                                                       375   e-104

>Glyma09g22260.1 
          Length = 1616

 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 174/215 (80%), Positives = 197/215 (91%)

Query: 7    LAQLPPDFHMQLYMEASRIIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 66
            LAQLP DFH QLY+E +RIIKE+WWL DG RSLGE+DSAVGYALLDPTWAAQDNTSTAIG
Sbjct: 1364 LAQLPSDFHSQLYLETTRIIKENWWLKDGTRSLGEIDSAVGYALLDPTWAAQDNTSTAIG 1423

Query: 67   NIVALLHSFFSNLPQEWLEGTHVIIKHLKPITSVAMLRIAFRIMGPLLPRLANAHSLFSK 126
            N+VALLHSFFSNLPQEWLEGT+VIIK L+P+TSVAMLRIAFR+MGPLLP+LANAH+LF+K
Sbjct: 1424 NVVALLHSFFSNLPQEWLEGTNVIIKQLRPVTSVAMLRIAFRVMGPLLPKLANAHALFNK 1483

Query: 127  TLSLLLNTMAEVFGRNSQPSTPVEASEITDLIDFLHHVIHYEGQGGPVQANSKPRPEVLA 186
            TLS LL  + +VFG+NSQ S  V+AS+I D+IDFLHHV+HYEGQGGPVQA+SKPRPEVLA
Sbjct: 1484 TLSSLLTILVDVFGKNSQTSIAVDASDIADIIDFLHHVVHYEGQGGPVQASSKPRPEVLA 1543

Query: 187  LCGRAAENLRPDIQHLLSHLKPDTNSSIYAATHPK 221
            L GRA+E+LRPDIQHLLSHL PD NSS+YAA HPK
Sbjct: 1544 LIGRASESLRPDIQHLLSHLNPDVNSSVYAAFHPK 1578