Jatropha Genome Database

JcCA0020001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020001.10 + phase: 0 /pseudo/partial
         (672 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g28050.1                                                       377   e-104
Glyma10g39710.1                                                       357   3e-98
Glyma19g37600.1                                                       135   2e-31
Glyma10g07660.1                                                       134   3e-31
Glyma03g34910.1                                                       126   6e-29
Glyma19g37610.1                                                       118   2e-26

>Glyma20g28050.1 
          Length = 837

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/284 (63%), Positives = 214/284 (75%), Gaps = 5/284 (1%)

Query: 367 LDPVHATQGHGAAMSMVRSNPVPFM-LPLPVNNIPNT---LQXXXXXXXXXXXXXXXXQM 422
           + P     GHGA++S   SNP+P +  PLP  +I N    LQ                QM
Sbjct: 540 MRPSVNVNGHGASISTAMSNPLPVIPFPLPFQSIANNPLHLQGGAHPSLPPGRPPAPSQM 599

Query: 423 IHVPQNVGPVAPNQPPGSAFSGLIGSLMAQGLISLTKQTPGQDSVGLEFNADLIKVRHES 482
           I  P NVG    +Q P   ++ LI SLM+QG+ISL  Q P QDSVG EFN D++KVRHES
Sbjct: 600 IPHP-NVGAYMSSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKVRHES 658

Query: 483 AISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKHKPSRKWFVDTSMWLS 542
           A++ALY DLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSK RK KPSRKWFV   MWLS
Sbjct: 659 AVNALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKTRKQKPSRKWFVSDRMWLS 718

Query: 543 GAEALGTDAVPGFLPTESVVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEEWMYK 602
           GAEALGT++ PGFLPTE++ E+KDDEE+AVPA+E+QN CALCGEPFD+FYSDE EEWMY+
Sbjct: 719 GAEALGTESAPGFLPTETIEERKDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYR 778

Query: 603 GAVYMNAPNGSTAGMERSQLGPIVHAKCRSESSVAPPEDFRCDD 646
           GAVY+NAP G+TAGM+R+QLGPI+HAKCRSES++A  ED   D+
Sbjct: 779 GAVYLNAPTGTTAGMDRTQLGPIIHAKCRSESNMATSEDLGPDE 822


>Glyma10g39710.1 
          Length = 837

 Score =  357 bits (916), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 174/276 (63%), Positives = 206/276 (74%), Gaps = 5/276 (1%)

Query: 375 GHGAAMSMVRSNPVPFMLPL----PVNNIPNTLQXXXXXXXXXXXXXXXXQMIHVPQNVG 430
           GHG ++S   SNP+P +        ++N P  LQ                QMI  P N G
Sbjct: 548 GHGVSISTAMSNPLPVLPFPLPFQSISNNPLHLQGGAHPPLPPGRPPAPSQMIPHP-NAG 606

Query: 431 PVAPNQPPGSAFSGLIGSLMAQGLISLTKQTPGQDSVGLEFNADLIKVRHESAISALYAD 490
              P+Q P   ++ LI SLM+QG+ISL  Q P QDSVG EFN D++K+RHESA++ALY D
Sbjct: 607 AFMPSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKIRHESAVNALYGD 666

Query: 491 LPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKHKPSRKWFVDTSMWLSGAEALGTD 550
           LPRQCTTC LRFKCQEEHSSHMDWHVTKNRMSK+RK KPSRKWFV   MWLSGAEALGT+
Sbjct: 667 LPRQCTTCALRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTE 726

Query: 551 AVPGFLPTESVVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEEWMYKGAVYMNAP 610
           + PGFLPTE++ E KD EE+AVPA+E+QN CALCGEPFD+FYSDE EEWMY+GAVY+NAP
Sbjct: 727 SAPGFLPTETIEEMKDHEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAP 786

Query: 611 NGSTAGMERSQLGPIVHAKCRSESSVAPPEDFRCDD 646
            G TAGM+RSQLGPI+HAKCRSES++A  ED   D+
Sbjct: 787 LGITAGMDRSQLGPIIHAKCRSESNMATSEDLGLDE 822


>Glyma19g37600.1 
          Length = 831

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 16/176 (9%)

Query: 467 VGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRK 526
           VG +F  ++I+  H S I  L+ D P  C  CG++ K +E  + H++WH T       R+
Sbjct: 657 VGFDFRPNVIREFHPSVIRELWDDFPHNCKVCGIKLKQEELFNRHLEWHAT-------RE 709

Query: 527 HKP---SRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDE---EMAVPADEEQNA 580
           H P   SR W+ ++S W++G     +++  GF  +  V E+K D    +  V ADE Q  
Sbjct: 710 HGPIKASRSWYAESSDWIAGKAEYSSES--GFNDSVDVHEQKTDSSQLDTMVLADENQCL 767

Query: 581 CALCGEPFDDFYSDETEEWMYKGAVYMNAPNGSTAGMERSQLGPIVHAKCRSESSV 636
           C LCGE F+D Y  E  EWM+KGAVYMN  +     ME   +GPI+HAKC SE+S+
Sbjct: 768 CVLCGELFEDAYCHERNEWMFKGAVYMNYSD-VNCEMESRNVGPIIHAKCLSENSI 822


>Glyma10g07660.1 
          Length = 898

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 112/189 (59%), Gaps = 8/189 (4%)

Query: 455 ISLTKQT-PG-QDSVGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHM 512
           ISL++ T PG ++ +GLEF  D+I+  H S +S L+ + P QC+ CG + + QE+ + H+
Sbjct: 686 ISLSESTSPGIRNLIGLEFKPDVIREFHSSVVSGLFDNFPHQCSICGHKLRFQEQFNRHL 745

Query: 513 DWHVTKNRMSKNRKHKPSRKWFVDTSMWLSG-AEALGTDAVPGFLPTESVVEKKDDEEMA 571
            WH T  R S+      + +W++ ++ W+ G AE    +     + T      K  E+  
Sbjct: 746 KWHAT--RESEENGLISASRWYLKSNDWILGKAEYPSENEFTDSVDTYGKEADKSQEDAM 803

Query: 572 VPADEEQNACALCGEPFDDFYSDETEEWMYKGAVYM-NAPNGSTAGME--RSQLGPIVHA 628
           V ADE+Q  C LCGE F+DFY  ET EWM+KGAVY+ N+ + S  G+    +  GPI+HA
Sbjct: 804 VLADEKQCLCVLCGELFEDFYCQETGEWMFKGAVYLANSDSKSEMGIRDVSTGRGPIIHA 863

Query: 629 KCRSESSVA 637
            C S++SV+
Sbjct: 864 SCLSDNSVS 872


>Glyma03g34910.1 
          Length = 754

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 99/176 (56%), Gaps = 16/176 (9%)

Query: 467 VGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRK 526
           +G +F  ++I+  H S I  L+ D+P  C  CG++ K +E  + H++WH T       R+
Sbjct: 582 IGFDFRPNVIREFHPSVIRELWDDIPHHCKVCGIKLKQEELFNRHLEWHAT-------RE 634

Query: 527 HKP---SRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDE---EMAVPADEEQNA 580
           H P   SR W+  +S W++G     +++   F  +  V ++K      +  V ADE Q  
Sbjct: 635 HGPIKASRSWYAKSSDWIAGKAEYSSES--EFNDSVDVHDEKTGSSQLDTMVLADENQCL 692

Query: 581 CALCGEPFDDFYSDETEEWMYKGAVYMNAPNGSTAGMERSQLGPIVHAKCRSESSV 636
           C LCGE F+D Y  E  EWM+KG +YMN  + ++  ME   +GPI+HAKC SE+S+
Sbjct: 693 CVLCGELFEDVYCHERNEWMFKGTIYMNYSDVNSE-MESGNVGPIIHAKCLSENSI 747


>Glyma19g37610.1 
          Length = 975

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 95/176 (53%), Gaps = 17/176 (9%)

Query: 467 VGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRK 526
           +G +F  ++I+  H S I  L+ D P  C  CG++ K QE  + H++WH         R+
Sbjct: 804 IGFDFRPNVIREFHPSVIRELWDDFPHNCKVCGIKLK-QELFNRHLEWHAA-------RE 855

Query: 527 HKP---SRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDE---EMAVPADEEQNA 580
           H P   SR W+  +  W++G     +++   F  +  + +KK D    +  V ADE Q  
Sbjct: 856 HGPIKASRSWYAKSIDWIAGRTEYSSESE--FTDSVDLQDKKIDSSQLDTMVLADENQCL 913

Query: 581 CALCGEPFDDFYSDETEEWMYKGAVYMNAPNGSTAGMERSQLGPIVHAKCRSESSV 636
           C LCGE F+D    +  EWM+KGAVYMN  +     ME   +GPI+HAKC SE+SV
Sbjct: 914 CVLCGELFEDVCCHDRNEWMFKGAVYMNFSD-VNCEMESRNVGPIIHAKCLSENSV 968