Jatropha Genome Database

JcCA0019701.60
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0019701.60 + phase: 0 /pseudo
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g17040.1                                                       157   2e-39
Glyma10g02760.1                                                       156   4e-39
Glyma13g38850.1                                                        93   7e-20
Glyma16g17660.1                                                        93   8e-20
Glyma11g18090.1                                                        91   3e-19
Glyma12g10120.1                                                        91   3e-19
Glyma12g31540.1                                                        91   4e-19

>Glyma02g17040.1 
          Length = 881

 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)

Query: 1  MGSKPWLHPAPTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSHGPRLILFGGATAIEGG 60
          MGSKPWL+PAPTYR +ET+W TDEDAPGPRCGHTLTAVAAT + GPRLILFGGATAIE G
Sbjct: 1  MGSKPWLYPAPTYRTIETFWVTDEDAPGPRCGHTLTAVAATKTQGPRLILFGGATAIE-G 59

Query: 61 GSSSAPGIRLAGVTNSVHSYDVLTRKWT 88
          GSSSAPGIRLAGVTN+VHSYDV +RKWT
Sbjct: 60 GSSSAPGIRLAGVTNTVHSYDVQSRKWT 87


>Glyma10g02760.1 
          Length = 936

 Score =  156 bits (395), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)

Query: 1  MGSKPWLHPAPTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSHGPRLILFGGATAIEGG 60
          MGSKPWL+PAPTYR +ET WDTDEDAPGPRCGHTLTAVAAT + GPRLILFGGATAIE G
Sbjct: 1  MGSKPWLYPAPTYRTIETVWDTDEDAPGPRCGHTLTAVAATKTLGPRLILFGGATAIE-G 59

Query: 61 GSSSAPGIRLAGVTNSVHSYDVLTRKWT 88
          GSSSAPGIRLAGVTN+VH+YDV +RKWT
Sbjct: 60 GSSSAPGIRLAGVTNTVHAYDVQSRKWT 87


>Glyma13g38850.1 
          Length = 988

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 57/92 (61%), Gaps = 13/92 (14%)

Query: 10  APTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSH------GPRLILFGGATAIEGGGSS 63
           APTY  +    +  ED PGPRCGHTLTAVAA          GPRLILFGGATA+EG  ++
Sbjct: 64  APTYTVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAA 123

Query: 64  SA-------PGIRLAGVTNSVHSYDVLTRKWT 88
           S         GIRLAG T  VH YDVLT KW+
Sbjct: 124 SGTPSSAGNAGIRLAGATADVHCYDVLTNKWS 155


>Glyma16g17660.1 
          Length = 209

 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 1  MGSKPWLHPAPTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSHGPRLILFGGATAIEGG 60
          MGSK WL+  PTY+ +ET+W TDE+AP P CGHT T VA T + GP +ILFGGA AIE G
Sbjct: 1  MGSKSWLYLVPTYQTIETFWVTDENAPSPHCGHTFTVVATTKTQGPHVILFGGAIAIE-G 59

Query: 61 GSSSAPGIRLAGVTNSVHSYDV 82
          GSSSAP  + + + +   ++ V
Sbjct: 60 GSSSAPTFQESLIPSIPMTFKV 81


>Glyma11g18090.1 
          Length = 1010

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 57/92 (61%), Gaps = 13/92 (14%)

Query: 10  APTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSH------GPRLILFGGATAIEGGGSS 63
           APTY  +    +  ED PGPRCGHTLTAVAA          GPRLILFGGATA+EG  ++
Sbjct: 76  APTYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTSGYIGPRLILFGGATALEGNSAA 135

Query: 64  SA-------PGIRLAGVTNSVHSYDVLTRKWT 88
           S         GIRLAG T  VH YDV++ KW+
Sbjct: 136 SGTPSSAGNAGIRLAGATADVHCYDVISNKWS 167


>Glyma12g10120.1 
          Length = 1001

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 56/92 (60%), Gaps = 13/92 (14%)

Query: 10  APTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSH------GPRLILFGGATAIEGGGSS 63
           APTY  +    +  ED PGPRCGHTLTAVAA          GPRLILFGGATA+EG  + 
Sbjct: 68  APTYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAV 127

Query: 64  SA-------PGIRLAGVTNSVHSYDVLTRKWT 88
           S         GIRLAG T  +H YDV+T KW+
Sbjct: 128 SGTPSSAGNAGIRLAGATADIHCYDVITNKWS 159


>Glyma12g31540.1 
          Length = 951

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 56/92 (60%), Gaps = 13/92 (14%)

Query: 10  APTYRPLETYWDTDEDAPGPRCGHTLTAVAATNSH------GPRLILFGGATAIEGG--- 60
           AP+Y  +    +  ED PGPRCGHTLTAVAA          GPRLILFGGATA+EG    
Sbjct: 67  APSYTVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAA 126

Query: 61  ----GSSSAPGIRLAGVTNSVHSYDVLTRKWT 88
                S+   GIRLAG T  VH YDVLT KW+
Sbjct: 127 TGTPSSAGNAGIRLAGATADVHCYDVLTNKWS 158