Jatropha Genome Database

JcCA0015391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0015391.10 + phase: 0 /pseudo
         (313 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g03600.1                                                        57   2e-08
Glyma07g34120.1                                                        52   8e-07

>Glyma06g03600.1 
          Length = 226

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 15/136 (11%)

Query: 172 DDIYNKETETLVSSTRSFSD-YSSPDFSTHLQTISEVSHPFGINHRNKKVKKAKRHVTSK 230
           D++   E+ETL+S   SFSD +   +      + S      G       VKK +R     
Sbjct: 95  DNVEEDESETLISCMTSFSDEFCLGEEKDLSSSSSLRRKKMG------SVKKVRR----- 143

Query: 231 ARKSCSEAASFSPARLSTFERLLPCTVDGKVKESFAVVKKSEDPYXXXXXXXXXXXXXXX 290
            R   SE    +  + +T  R    +V+GKVKESFAVVKKS+DPY               
Sbjct: 144 VRFQSSEKRRGTEVKKTTVTRR---SVEGKVKESFAVVKKSKDPYEDFRKSMMEMITEME 200

Query: 291 XXXVKDLEQLLQCFLS 306
               +DLEQLLQCFL+
Sbjct: 201 MSEAEDLEQLLQCFLA 216


>Glyma07g34120.1 
          Length = 166

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 256 TVDGKVKESFAVVKKSEDPYXXXXXXXXXXXXXXXXXXVKDLEQLLQCFLS 306
           +V+GKVKESFAVVKKS+DPY                   +DLEQLLQCFL+
Sbjct: 83  SVEGKVKESFAVVKKSKDPY---EDLRKSMITEMEMSEAEDLEQLLQCFLA 130